LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
PRICKLE2-AS1
hsa-miR-657
0.897
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000482609
Biotype: antisense
Gene id: ENSG00000241111
Gene Name: PRICKLE2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
348-359
0.033
8
7mer
1205-1214
0.005
1
8mer
5572-5588
0.004
1
7mer
1226-1250
0.003
1
6mer
2971-2992
0.001
5
RP11-212I21.2
hsa-miR-657
0.897
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565307
Biotype: lincRNA
Gene id: ENSG00000260135
Gene Name: RP11-212I21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
48-69
0.046
11
LINC01061
hsa-miR-657
0.896
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037596.1
Biotype: lincRNA
Gene id: NR_037596.1 (gene)
Gene Name: LINC01061
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
432-454
0.005
1
6mer
4419-4440
0.004
0
6mer
325-347
0.003
0
6mer
4164-4183
0.003
0
6mer
567-591
0.003
0
6mer
1967-1992
0.002
0
6mer
3516-3538
0.002
0
6mer
2912-2934
0.002
0
6mer
289-312
0.002
Not Conserved
6mer
927-946
0.002
Not Conserved
8mer
1889-1903
0.002
Not Conserved
6mer
796-817
0.001
0
6mer
3078-3097
0.001
0
6mer
1153-1175
0.001
0
6mer
3842-3863
0.001
Not Conserved
6mer
2699-2720
0.001
0
6mer
3266-3284
0.001
0
6mer
2381-2402
0.001
0
6mer
1367-1391
0.001
0
6mer
3421-3443
0.001
0
6mer
3234-3255
0.001
1
6mer
1117-1142
0.001
0
6mer
1681-1702
0.001
0
6mer
1808-1829
0.001
0
6mer
2844-2869
0.001
0
6mer
1254-1277
0.001
0
6mer
2602-2623
0.001
0
6mer
3512-3538
0.001
0
6mer
1871-1893
0.001
0
6mer
1496-1517
0.001
Not Conserved
6mer
2570-2591
0.000
0
LINC00901
hsa-miR-657
0.896
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487512
Biotype: antisense
Gene id: ENSG00000242385
Gene Name: LINC00901
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
240-263
0.032
1
7mer
486-506
0.011
0
6mer
502-519
0.002
0
FAM66C
hsa-miR-657
0.895
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420514
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
313-334
0.022
0
6mer
530-547
0.021
0
6mer
379-401
0.002
Not Conserved
LINC01005
hsa-miR-657
0.895
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000441691
Biotype: antisense
Gene id: ENSG00000228564
Gene Name: LINC01005
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
471-482
0.017
1
6mer
335-353
0.016
1
6mer
411-437
0.013
1
AP001476.4
hsa-miR-657
0.894
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000429512
Biotype: lincRNA
Gene id: ENSG00000228235
Gene Name: AP001476.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
269-288
0.009
0
6mer
367-386
0.009
0
6mer
334-353
0.009
0
6mer
298-320
0.008
0
6mer
187-205
0.007
0
6mer
284-302
0.002
Not Conserved
MKNK1-AS1
hsa-miR-657
0.894
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602433
Biotype: antisense
Gene id: ENSG00000269956
Gene Name: MKNK1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2426-2432
0.033
1
6mer
439-461
0.003
1
7mer
1488-1512
0.003
1
7mer
471-497
0.003
1
6mer
1196-1215
0.002
2
6mer
1224-1239
0.001
1
RP11-69I8.2
hsa-miR-657
0.893
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454596
Biotype: lincRNA
Gene id: ENSG00000236673
Gene Name: RP11-69I8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
538-565
0.010
1
6mer
756-782
0.009
1
7mer
208-232
0.008
0
6mer
788-813
0.006
1
6mer
354-379
0.005
0
6mer
971-991
0.004
1
6mer
987-1008
0.004
1
CTD-2249K22.1
hsa-miR-657
0.893
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512859
Biotype: lincRNA
Gene id: ENSG00000249483
Gene Name: CTD-2249K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-596
0.045
7
XLOC_000788
hsa-miR-657
0.891
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000505
Biotype: transcript isomorph
Gene id: XLOC_000788
Gene Name: XLOC_000788
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3175-3202
0.022
3
7mer
3230-3243
0.006
3
7mer
2983-3006
0.005
1
6mer
37-59
0.005
1
6mer
2979-3006
0.002
0
6mer
3131-3157
0.002
1
6mer
1463-1488
0.002
1
6mer
1434-1455
0.001
6
AC008079.10
hsa-miR-657
0.889
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623543
Biotype: antisense
Gene id: ENSG00000280007
Gene Name: AC008079.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3016-3039
0.006
0
6mer
65-82
0.006
7
7mer
11691-11706
0.003
2
7mer
9165-9186
0.003
1
6mer
149-172
0.003
1
6mer
19411-19425
0.002
1
6mer
13562-13582
0.002
5
6mer
5600-5621
0.002
4
6mer
14662-14688
0.002
1
6mer
13410-13431
0.001
7
6mer
8255-8265
0.001
1
7mer
6786-6807
0.001
0
6mer
13822-13842
0.001
1
6mer
9842-9860
0.001
0
6mer
12257-12283
0.001
0
6mer
1675-1695
0.001
0
6mer
17654-17672
0.001
2
6mer
4883-4899
0.001
1
6mer
3277-3303
0.001
0
6mer
6100-6121
0.001
1
6mer
6944-6970
0.001
0
6mer
17206-17232
0.001
Not Conserved
6mer
6922-6948
0.001
1
6mer
2976-3001
0.000
2
RP5-1120P11.3
hsa-miR-657
0.889
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000455005
Biotype: lincRNA
Gene id: ENSG00000231881
Gene Name: RP5-1120P11.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1589-1595
0.029
2
6mer
551-564
0.006
5
6mer
357-377
0.004
1
6mer
902-920
0.003
0
7mer
1260-1276
0.002
1
RP11-474D1.3
hsa-miR-657
0.888
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000567788
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-753
0.017
0
7mer
4322-4348
0.010
Not Conserved
6mer
4529-4550
0.007
2
6mer
4127-4154
0.004
1
7mer
3429-3438
0.003
1
6mer
3030-3056
0.002
1
7mer
2897-2921
0.001
0
AC079466.1
hsa-miR-657
0.888
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000587961
Biotype: lincRNA
Gene id: ENSG00000266976
Gene Name: AC079466.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1787-1806
0.028
1
6mer
3427-3438
0.010
1
7mer
1240-1262
0.004
0
7mer
442-466
0.003
Not Conserved
LINC01237
hsa-miR-657
0.887
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430555
Biotype: lincRNA
Gene id: ENSG00000233806
Gene Name: LINC01237
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
675-700
0.024
1
6mer
696-704
0.016
1
6mer
254-280
0.004
Not Conserved
RP11-15H20.6
hsa-miR-657
0.886
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
176-191
0.020
1
6mer
101-120
0.020
1
6mer
40-62
0.004
0
XLOC_004205
hsa-miR-657
0.886
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008689
Biotype: transcript isomorph
Gene id: XLOC_004205
Gene Name: XLOC_004205
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5212-5226
0.025
2
7mer
4644-4658
0.006
1
7mer
4474-4497
0.003
0
7mer
3461-3486
0.002
0
7mer
1458-1476
0.002
1
7mer
4086-4104
0.002
0
6mer
4220-4242
0.002
0
6mer
2113-2137
0.001
1
6mer
2047-2067
0.001
1
CTD-2555K7.2
hsa-miR-657
0.885
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553792
Biotype: antisense
Gene id: ENSG00000258458
Gene Name: CTD-2555K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-200
0.044
1
XLOC_008461
hsa-miR-657
0.885
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017672
Biotype: transcript isomorph
Gene id: XLOC_008461
Gene Name: XLOC_008461
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5841-5863
0.006
1
7mer
1044-1066
0.005
0
6mer
5625-5649
0.004
1
6mer
5874-5895
0.004
1
7mer
1130-1156
0.003
1
6mer
667-690
0.003
0
6mer
5874-5899
0.002
0
6mer
5239-5258
0.002
0
6mer
5336-5357
0.002
1
6mer
1152-1178
0.002
1
6mer
2029-2050
0.002
0
6mer
2949-2975
0.001
1
6mer
2604-2625
0.001
0
6mer
2287-2306
0.001
Not Conserved
6mer
4748-4774
0.001
0
6mer
2825-2851
0.001
0
6mer
2731-2752
0.001
0
6mer
3057-3082
0.001
0
6mer
2381-2402
0.001
0
6mer
3293-3313
0.001
0
6mer
3190-3211
0.000
Not Conserved
6mer
3190-3215
0.000
Not Conserved
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