LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
XLOC_013968
hsa-miR-657
0.911
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029050
Biotype: transcript isomorph
Gene id: XLOC_013968
Gene Name: XLOC_013968
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
390-412
0.008
1
6mer
610-629
0.004
3
6mer
57-80
0.004
1
6mer
1524-1530
0.003
0
6mer
493-519
0.003
1
6mer
34-61
0.003
1
6mer
722-741
0.003
3
6mer
769-773
0.003
2
6mer
516-535
0.002
2
6mer
532-551
0.002
2
6mer
843-847
0.002
2
6mer
888-911
0.002
2
6mer
626-645
0.002
1
6mer
844-863
0.002
3
6mer
690-709
0.002
1
6mer
662-677
0.002
1
6mer
925-943
0.001
1
6mer
786-805
0.001
Not Conserved
6mer
876-895
0.001
1
CTA-292E10.9
hsa-miR-657
0.910
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623127
Biotype: antisense
Gene id: ENSG00000280111
Gene Name: CTA-292E10.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24269-24289
0.009
1
6mer
24894-24913
0.006
2
6mer
11738-11765
0.004
14
6mer
749-774
0.003
0
6mer
24059-24085
0.002
1
6mer
14974-14991
0.002
1
6mer
8966-8990
0.002
1
6mer
534-561
0.002
0
6mer
21858-21884
0.002
1
6mer
953-980
0.002
0
6mer
2868-2894
0.002
1
6mer
17125-17150
0.002
0
6mer
22189-22211
0.001
0
6mer
23207-23233
0.001
1
6mer
6177-6200
0.001
1
6mer
19781-19805
0.001
0
6mer
9340-9366
0.001
0
6mer
14074-14100
0.001
1
6mer
15275-15291
0.001
1
6mer
15762-15783
0.001
4
6mer
16302-16313
0.001
1
6mer
17413-17436
0.001
3
6mer
15853-15877
0.000
Not Conserved
6mer
21901-21921
0.000
1
6mer
15866-15883
0.000
Not Conserved
CTD-2555K7.2
hsa-miR-657
0.909
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000554857
Biotype: antisense
Gene id: ENSG00000258458
Gene Name: CTD-2555K7.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-445
0.048
1
TTLL10-AS1
hsa-miR-657
0.908
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000379317
Biotype: antisense
Gene id: ENSG00000205231
Gene Name: TTLL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
868-893
0.005
4
6mer
3280-3293
0.003
0
6mer
3172-3185
0.003
0
6mer
3197-3210
0.003
0
6mer
3409-3431
0.003
0
6mer
3114-3127
0.003
0
6mer
3255-3268
0.003
0
6mer
3089-3102
0.002
0
6mer
3222-3246
0.002
0
6mer
3006-3019
0.002
0
6mer
2958-2971
0.002
0
6mer
2900-2913
0.002
0
6mer
3064-3077
0.002
Not Conserved
6mer
2983-3009
0.002
0
6mer
2875-2888
0.002
0
6mer
2817-2830
0.002
0
6mer
3031-3055
0.002
0
6mer
2925-2949
0.002
0
6mer
2686-2699
0.001
0
6mer
2769-2782
0.001
0
6mer
2744-2765
0.001
0
6mer
2711-2735
0.001
Not Conserved
RP11-473M20.7
hsa-miR-657
0.908
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000573130
Biotype: antisense
Gene id: ENSG00000261971
Gene Name: RP11-473M20.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3862-3869
0.005
2
6mer
935-961
0.004
1
6mer
3653-3675
0.003
0
6mer
4379-4401
0.003
0
6mer
3553-3575
0.003
1
6mer
506-524
0.002
1
6mer
3453-3471
0.002
1
6mer
3421-3439
0.002
1
6mer
3521-3539
0.002
0
6mer
3385-3407
0.002
1
6mer
4059-4083
0.002
0
6mer
1399-1423
0.002
3
7mer
3013-3037
0.002
0
6mer
3353-3371
0.001
0
6mer
2599-2621
0.001
0
6mer
3181-3203
0.001
0
6mer
1580-1601
0.001
2
6mer
3285-3303
0.001
0
6mer
3317-3339
0.001
0
6mer
2143-2165
0.001
0
7mer
1265-1285
0.001
1
6mer
3145-3167
0.001
0
6mer
1634-1656
0.001
Not Conserved
6mer
3037-3054
0.001
Not Conserved
6mer
1391-1416
0.001
1
6mer
1373-1395
0.001
0
6mer
1621-1643
0.001
0
PWRN2
hsa-miR-657
0.907
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000567854
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-109
0.032
0
8mer
279-302
0.016
Not Conserved
LINC00664
hsa-miR-657
0.907
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596718
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2305-2323
0.023
1
9mer
1945-1963
0.010
1
6mer
233-255
0.006
0
6mer
1872-1887
0.003
1
6mer
1270-1296
0.003
0
6mer
497-508
0.002
Not Conserved
6mer
684-694
0.002
Not Conserved
CTD-2503I6.1
hsa-miR-657
0.906
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000550941
Biotype: antisense
Gene id: ENSG00000257120
Gene Name: CTD-2503I6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-549
0.043
0
6mer
190-215
0.005
2
RP11-866E20.3
hsa-miR-657
0.906
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000585691
Biotype: lincRNA
Gene id: ENSG00000267462
Gene Name: RP11-866E20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1149-1168
0.034
0
6mer
20-39
0.004
0
6mer
324-350
0.004
1
6mer
254-281
0.003
0
7mer
614-631
0.002
Not Conserved
XLOC_013272
hsa-miR-657
0.905
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027233
Biotype: transcript isomorph
Gene id: XLOC_013272
Gene Name: XLOC_013272
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
204-231
0.020
0
6mer
320-324
0.013
0
6mer
818-840
0.009
0
6mer
1543-1565
0.003
Not Conserved
6mer
1177-1199
0.002
Not Conserved
RP5-945F2.2
hsa-miR-657
0.905
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000424888
Biotype: lincRNA
Gene id: ENSG00000236531
Gene Name: RP5-945F2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
705-728
0.042
0
6mer
48-74
0.006
1
XLOC_011715
hsa-miR-657
0.904
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024390
Biotype: transcript isomorph
Gene id: XLOC_011715
Gene Name: XLOC_011715
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3948-3962
0.036
5
7mer
3044-3062
0.006
1
6mer
564-588
0.002
2
6mer
1218-1232
0.002
1
6mer
1772-1798
0.001
1
LINC01198
hsa-miR-657
0.902
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000594153
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
503-525
0.027
0
7mer
438-456
0.010
0
6mer
359-386
0.006
0
6mer
280-306
0.004
Not Conserved
INO80B-WBP1
hsa-miR-657
0.901
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_037849.1
Biotype: sense
Gene id: NR_037849.1 (gene)
Gene Name: INO80B-WBP1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1087-1111
0.015
10
6mer
264-288
0.008
8
6mer
1970-1987
0.005
5
7mer
1541-1563
0.005
Not Conserved
6mer
1568-1589
0.004
8
6mer
1678-1701
0.004
8
6mer
1727-1754
0.004
1
6mer
1660-1682
0.002
2
RP11-227F19.1
hsa-miR-657
0.901
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508038
Biotype: antisense
Gene id: ENSG00000250467
Gene Name: RP11-227F19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
621-627
0.036
3
6mer
55-80
0.011
14
RP11-65J21.3
hsa-miR-657
0.901
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000570945
Biotype: lincRNA
Gene id: ENSG00000262454
Gene Name: RP11-65J21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
293-320
0.044
6
6mer
162-184
0.003
1
RP11-1123I8.1
hsa-miR-657
0.901
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000611634
Biotype: antisense
Gene id: ENSG00000278408
Gene Name: RP11-1123I8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
421-441
0.047
7
LINC00999
hsa-miR-657
0.901
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_024497.2
Biotype: lincRNA
Gene id: NR_024497.2 (gene)
Gene Name: LINC00999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-341
0.010
1
6mer
4903-4925
0.006
1
6mer
337-363
0.005
1
6mer
4687-4711
0.004
1
6mer
4936-4957
0.004
1
6mer
4936-4961
0.002
0
6mer
1091-1112
0.002
0
6mer
4301-4320
0.002
0
6mer
4398-4419
0.002
1
6mer
1666-1687
0.001
0
6mer
2011-2037
0.001
1
6mer
1349-1368
0.001
Not Conserved
6mer
3810-3836
0.001
0
6mer
1887-1913
0.001
0
6mer
1443-1464
0.001
0
6mer
1793-1814
0.001
0
6mer
2119-2144
0.001
0
6mer
2355-2375
0.001
0
6mer
2252-2273
0.000
Not Conserved
6mer
2252-2277
0.000
Not Conserved
RP11-727F15.9
hsa-miR-657
0.900
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535817
Biotype: antisense
Gene id: ENSG00000256690
Gene Name: RP11-727F15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
179-199
0.033
5
6mer
139-156
0.007
7
6mer
425-430
0.006
5
RP11-727F15.9
hsa-miR-657
0.898
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000535867
Biotype: antisense
Gene id: ENSG00000256690
Gene Name: RP11-727F15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
295-315
0.032
5
6mer
255-272
0.007
7
6mer
541-546
0.007
5
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