LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-329N22.1
hsa-miR-657
0.925
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000452971
Biotype: lincRNA
Gene id: ENSG00000238063
Gene Name: RP11-329N22.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
260-273
0.030
5
7mer
479-495
0.009
2
6mer
369-381
0.007
8
6mer
357-377
0.003
3
6mer
357-373
0.003
2
AC079612.1
hsa-miR-657
0.924
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000358775
Biotype: lincRNA
Gene id: ENSG00000196758
Gene Name: AC079612.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3531-3543
0.041
0
6mer
408-429
0.004
0
6mer
3450-3468
0.003
0
6mer
2062-2084
0.001
0
7mer
2613-2638
0.001
0
6mer
467-482
0.001
0
6mer
2138-2162
0.001
0
6mer
1671-1697
0.001
Not Conserved
CTD-2008P7.1
hsa-miR-657
0.923
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000564762
Biotype: lincRNA
Gene id: ENSG00000260777
Gene Name: CTD-2008P7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
354-372
0.019
0
7mer
569-592
0.011
0
6mer
196-218
0.010
1
7mer
702-707
0.010
0
XLOC_010949
hsa-miR-657
0.923
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022645
Biotype: transcript isomorph
Gene id: XLOC_010949
Gene Name: XLOC_010949
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-96
0.051
1
RP11-495P10.8
hsa-miR-657
0.922
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000434245
Biotype: lincRNA
Gene id: ENSG00000231196
Gene Name: RP11-495P10.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
359-386
0.018
0
6mer
296-318
0.017
0
6mer
474-492
0.016
0
XLOC_011484
hsa-miR-657
0.921
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023685
Biotype: transcript isomorph
Gene id: XLOC_011484
Gene Name: XLOC_011484
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
602-619
0.051
0
RP11-32B5.8
hsa-miR-657
0.921
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000594169
Biotype: lincRNA
Gene id: ENSG00000268531
Gene Name: RP11-32B5.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
227-242
0.009
1
6mer
1841-1861
0.008
1
6mer
115-134
0.005
1
6mer
24-49
0.005
0
6mer
478-502
0.005
1
6mer
634-654
0.005
1
6mer
1193-1220
0.004
1
8mer
1923-1931
0.003
Not Conserved
6mer
655-676
0.003
0
6mer
785-800
0.002
0
6mer
634-659
0.001
Not Conserved
6mer
704-731
0.001
Not Conserved
XX-C2158C6.3
hsa-miR-657
0.921
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415530
Biotype: lincRNA
Gene id: ENSG00000225532
Gene Name: XX-C2158C6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-67
0.026
1
7mer
352-377
0.015
1
7mer
293-313
0.010
0
CTD-2358C21.3
hsa-miR-657
0.920
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000563338
Biotype: lincRNA
Gene id: ENSG00000260568
Gene Name: CTD-2358C21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9-32
0.020
1
6mer
141-164
0.017
1
6mer
113-135
0.014
1
LOC100129917
hsa-miR-657
0.919
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_036511.1
Biotype: lincRNA
Gene id: NR_036511.1 (gene)
Gene Name: LOC100129917
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1528-1553
0.015
1
6mer
1515-1532
0.011
1
6mer
1485-1502
0.010
1
6mer
1222-1240
0.008
1
6mer
702-718
0.006
1
XLOC_011093
hsa-miR-657
0.918
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022380
Biotype: transcript isomorph
Gene id: XLOC_011093
Gene Name: XLOC_011093
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
278-304
0.042
6
6mer
399-423
0.008
5
XLOC_011494
hsa-miR-657
0.916
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00024132
Biotype: transcript isomorph
Gene id: XLOC_011494
Gene Name: XLOC_011494
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-820
0.050
1
PCBP1-AS1
hsa-miR-657
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000596028
Biotype: antisense
Gene id: ENSG00000179818
Gene Name: PCBP1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
719-743
0.039
6
6mer
516-539
0.007
3
6mer
413-438
0.003
0
AC016683.5
hsa-miR-657
0.916
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438409
Biotype: antisense
Gene id: ENSG00000234174
Gene Name: AC016683.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
146-161
0.032
3
6mer
254-268
0.013
7
6mer
121-146
0.005
1
LINC01287
hsa-miR-657
0.916
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000416982
Biotype: lincRNA
Gene id: ENSG00000234722
Gene Name: LINC01287
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
204-222
0.025
0
6mer
606-627
0.013
0
6mer
1564-1582
0.008
0
7mer
1399-1420
0.003
Not Conserved
6mer
1032-1055
0.001
Not Conserved
CTBP1-AS2
hsa-miR-657
0.915
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505364
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
160-180
0.026
1
6mer
2019-2044
0.016
1
6mer
1063-1085
0.007
1
GS1-124K5.3
hsa-miR-657
0.914
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000412091
Biotype: lincRNA
Gene id: ENSG00000223473
Gene Name: GS1-124K5.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
160-174
0.049
0
RP11-152N13.16
hsa-miR-657
0.912
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000621900
Biotype: antisense
Gene id: ENSG00000272599
Gene Name: RP11-152N13.16
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-610
0.046
6
6mer
451-477
0.003
1
XLOC_003209
hsa-miR-657
0.912
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006601
Biotype: transcript isomorph
Gene id: XLOC_003209
Gene Name: XLOC_003209
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
381-386
0.042
9
6mer
2843-2870
0.002
6
6mer
1109-1136
0.002
2
6mer
658-680
0.002
0
RP11-358D14.2
hsa-miR-657
0.911
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000436263
Biotype: antisense
Gene id: ENSG00000226390
Gene Name: RP11-358D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-587
0.049
0
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