LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
XLOC_006074
hsa-miR-657
0.946
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013434
Biotype: transcript isomorph
Gene id: XLOC_006074
Gene Name: XLOC_006074
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
257-271
0.047
1
6mer
381-398
0.010
1
AC073130.1
hsa-miR-657
0.944
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000454897
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-372
0.045
0
7mer
386-392
0.012
1
RP11-15H20.6
hsa-miR-657
0.943
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000397094
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1905-1931
0.015
1
6mer
655-681
0.010
1
6mer
946-961
0.008
1
6mer
871-890
0.008
1
7mer
521-544
0.007
0
6mer
233-248
0.007
0
6mer
810-832
0.002
0
PWRN2
hsa-miR-657
0.942
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000566245
Biotype: lincRNA
Gene id: ENSG00000260551
Gene Name: PWRN2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
92-110
0.042
0
8mer
542-565
0.014
Not Conserved
RP11-204N11.1
hsa-miR-657
0.941
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555187
Biotype: lincRNA
Gene id: ENSG00000258869
Gene Name: RP11-204N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
94-110
0.056
6
XLOC_011650
hsa-miR-657
0.941
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024334
Biotype: transcript isomorph
Gene id: XLOC_011650
Gene Name: XLOC_011650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
329-353
0.049
6
6mer
53-71
0.007
1
XLOC_004915
hsa-miR-657
0.939
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010981
Biotype: transcript isomorph
Gene id: XLOC_004915
Gene Name: XLOC_004915
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
263-282
0.055
0
CLYBL-AS1
hsa-miR-657
0.938
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416009
Biotype: antisense
Gene id: ENSG00000234303
Gene Name: CLYBL-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-548
0.039
3
6mer
387-411
0.006
1
6mer
563-583
0.006
3
6mer
559-583
0.004
2
XLOC_010295
hsa-miR-657
0.935
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021711
Biotype: transcript isomorph
Gene id: XLOC_010295
Gene Name: XLOC_010295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
23-47
0.020
0
6mer
37-57
0.018
0
6mer
234-257
0.017
0
AC013472.4
hsa-miR-657
0.935
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416226
Biotype: antisense
Gene id: ENSG00000230286
Gene Name: AC013472.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14-34
0.054
8
AC073130.1
hsa-miR-657
0.935
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000457033
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1743-1769
0.036
0
7mer
1783-1789
0.011
1
7mer
834-852
0.007
1
AC073130.1
hsa-miR-657
0.931
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420594
Biotype: lincRNA
Gene id: ENSG00000237870
Gene Name: AC073130.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
217-243
0.040
0
7mer
257-263
0.013
1
XLOC_009043
hsa-miR-657
0.931
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019211
Biotype: transcript isomorph
Gene id: XLOC_009043
Gene Name: XLOC_009043
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
421-431
0.021
0
6mer
586-606
0.020
0
6mer
443-461
0.013
0
RP11-272B17.1
hsa-miR-657
0.930
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547088
Biotype: lincRNA
Gene id: ENSG00000258214
Gene Name: RP11-272B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3-28
0.053
2
CTA-796E4.5
hsa-miR-657
0.930
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624243
Biotype: lincRNA
Gene id: ENSG00000280065
Gene Name: CTA-796E4.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
31433-31438
0.010
1
6mer
431-455
0.005
1
7mer
20177-20204
0.005
1
7mer
2113-2123
0.004
1
6mer
745-757
0.003
1
6mer
30502-30527
0.003
0
7mer
29313-29333
0.002
1
6mer
16756-16778
0.002
1
6mer
10219-10239
0.002
1
6mer
18583-18607
0.002
0
6mer
15622-15634
0.002
1
6mer
8773-8799
0.001
1
6mer
2554-2570
0.001
1
6mer
20402-20406
0.001
Not Conserved
6mer
14186-14195
0.001
0
6mer
11213-11227
0.001
1
6mer
6066-6093
0.001
2
6mer
23446-23466
0.001
0
6mer
14740-14764
0.001
0
6mer
17742-17766
0.001
1
7mer
10235-10260
0.001
1
6mer
8935-8957
0.001
0
6mer
8997-9023
0.001
0
RP11-340A13.1
hsa-miR-657
0.929
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507912
Biotype: retained_intron
Gene id: ENSG00000249382
Gene Name: RP11-340A13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-212
0.036
0
6mer
363-383
0.017
1
XLOC_003455
hsa-miR-657
0.929
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007986
Biotype: transcript isomorph
Gene id: XLOC_003455
Gene Name: XLOC_003455
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
622-649
0.048
1
6mer
244-265
0.004
0
RP11-65J21.3
hsa-miR-657
0.927
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571639
Biotype: lincRNA
Gene id: ENSG00000262454
Gene Name: RP11-65J21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15-42
0.052
6
RP11-216M21.7
hsa-miR-657
0.927
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000450520
Biotype: lincRNA
Gene id: ENSG00000233207
Gene Name: RP11-216M21.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2332-2357
0.024
0
6mer
948-963
0.011
0
6mer
689-712
0.008
0
6mer
821-843
0.007
0
6mer
2637-2662
0.002
Not Conserved
AC093627.7
hsa-miR-657
0.926
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000465755
Biotype: lincRNA
Gene id: ENSG00000232325
Gene Name: AC093627.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
622-645
0.018
1
6mer
610-626
0.017
1
6mer
616-630
0.014
1
7mer
463-487
0.002
Not Conserved
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