LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-160H12.2
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533669
Biotype: antisense
Gene id: ENSG00000255311
Gene Name: RP11-160H12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
735-754
0.021
1
6mer
789-811
0.004
0
CTC-523E23.5
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000601776
Biotype: lincRNA
Gene id: ENSG00000269086
Gene Name: CTC-523E23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
340-363
0.010
2
8mer
2095-2122
0.005
0
8mer+wobble
124-151
0.003
1
6mer
4568-4594
0.002
0
6mer
2922-2944
0.002
1
6mer
2270-2296
0.001
0
6mer
2375-2398
0.001
1
LINC01002
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000618349
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-414
0.016
1
6mer
366-392
0.009
1
BDNF-AS
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499008
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
535-548
0.018
6
6mer
40-63
0.004
1
6mer
1587-1607
0.002
1
RP11-395P17.3
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_033374.1
Biotype: lincRNA
Gene id: NR_033374.1 (gene)
Gene Name: RP11-395P17.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3616-3639
0.006
3
7mer
218-241
0.005
0
6mer
353-379
0.003
0
6mer
2753-2776
0.003
4
6mer
2567-2592
0.002
1
6mer
722-745
0.002
0
6mer
1735-1755
0.002
1
6mer
2086-2105
0.001
1
6mer
2065-2090
0.001
1
PAX8-AS1
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000333145
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-123
0.012
10
8mer
793-816
0.005
3
7mer
91-96
0.004
1
6mer
1067-1079
0.002
1
6mer
1067-1083
0.001
2
RP11-245J24.1
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000436975
Biotype: lincRNA
Gene id: ENSG00000238276
Gene Name: RP11-245J24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
317-338
0.019
1
6mer
171-195
0.005
3
XLOC_009000
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018649
Biotype: transcript isomorph
Gene id: XLOC_009000
Gene Name: XLOC_009000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-67
0.008
Not Conserved
7mer
678-701
0.004
Not Conserved
6mer
267-293
0.003
0
6mer
163-189
0.003
0
6mer
743-765
0.003
0
6mer
98-121
0.003
Not Conserved
BDNF-AS
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_002832.2
Biotype: antisense
Gene id: NR_002832.2 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
535-548
0.018
6
6mer
40-63
0.004
1
6mer
1587-1607
0.002
1
RP11-133K1.7
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568093
Biotype: sense_intronic
Gene id: ENSG00000260648
Gene Name: RP11-133K1.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4023-4027
0.009
2
7mer
3107-3128
0.005
1
6mer
870-881
0.003
1
6mer
2015-2038
0.002
4
6mer
3170-3187
0.001
0
6mer
2165-2184
0.001
1
6mer
1733-1756
0.001
0
9mer
2198-2217
0.001
1
6mer
1819-1831
0.001
1
LINC01356
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000401018
Biotype: lincRNA
Gene id: ENSG00000215866
Gene Name: LINC01356
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1600-1624
0.006
2
6mer
1725-1730
0.005
1
6mer
148-168
0.004
Not Conserved
6mer
311-321
0.004
Not Conserved
6mer
36-58
0.003
Not Conserved
6mer
242-266
0.003
Not Conserved
XLOC_014103
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029159
Biotype: transcript isomorph
Gene id: XLOC_014103
Gene Name: XLOC_014103
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
411-435
0.014
1
6mer
770-795
0.004
1
6mer
363-378
0.003
1
6mer
374-392
0.003
0
6mer
370-392
0.001
Not Conserved
LRRC2-AS1
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000614743
Biotype: antisense
Gene id: ENSG00000268324
Gene Name: LRRC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
85-109
0.025
1
RP11-64P14.7
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000419604
Biotype: antisense
Gene id: ENSG00000234156
Gene Name: RP11-64P14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
278-304
0.020
1
6mer
211-226
0.005
0
GS1-421I3.2
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000454625
Biotype: lincRNA
Gene id: ENSG00000234493
Gene Name: GS1-421I3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-143
0.025
1
RP11-169D4.1
hsa-miR-657
0.701
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000450804
Biotype: lincRNA
Gene id: ENSG00000227467
Gene Name: RP11-169D4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
100-125
0.007
5
7mer
628-651
0.007
1
7mer
385-412
0.007
0
6mer
1343-1370
0.002
1
7mer
1380-1407
0.002
0
AC012358.8
hsa-miR-657
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594078
Biotype: antisense
Gene id: ENSG00000240401
Gene Name: AC012358.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-128
0.021
0
6mer
218-244
0.004
1
MIRLET7BHG
hsa-miR-657
0.700
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000360737
Biotype: lincRNA
Gene id: ENSG00000197182
Gene Name: MIRLET7BHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-508
0.004
2
6mer
4198-4222
0.003
4
6mer
4465-4491
0.002
0
6mer
4184-4211
0.002
3
7mer
895-916
0.002
1
6mer
327-340
0.002
0
6mer
803-824
0.002
1
6mer
355-379
0.002
1
6mer
3217-3236
0.001
1
6mer
957-977
0.001
3
6mer
1861-1872
0.001
3
6mer
1382-1403
0.001
1
6mer
2808-2826
0.001
0
6mer
3248-3274
0.000
0
6mer
2808-2830
0.000
1
AC084149.1
hsa-miR-657
0.700
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000438443
Biotype: lincRNA
Gene id: ENSG00000230968
Gene Name: AC084149.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
271-276
0.025
0
XLOC_008883
hsa-miR-657
0.700
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018986
Biotype: transcript isomorph
Gene id: XLOC_008883
Gene Name: XLOC_008883
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HepG2 Liver Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
464-483
0.007
2
7mer
59-80
0.006
0
6mer
788-810
0.005
1
6mer
357-373
0.003
0
6mer
391-417
0.003
1
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