LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-536C5.2
hsa-miR-657
0.706
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435580
Biotype: antisense
Gene id: ENSG00000225279
Gene Name: RP11-536C5.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
74-97
0.025
4
RP1-140C12.2
hsa-miR-657
0.706
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000564198
Biotype: sense_overlapping
Gene id: ENSG00000261003
Gene Name: RP1-140C12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
176-201
0.014
Not Conserved
6mer
185-205
0.003
1
6mer
4508-4532
0.003
1
7mer
1808-1814
0.003
1
6mer
3258-3274
0.002
0
TPT1-AS1
hsa-miR-657
0.706
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000434849
Biotype: retained_intron
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2094-2114
0.009
0
6mer
2281-2308
0.006
0
6mer
2126-2153
0.006
0
7mer
2213-2229
0.004
0
RP11-574O16.1
hsa-miR-657
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000564299
Biotype: lincRNA
Gene id: ENSG00000259855
Gene Name: RP11-574O16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
337-357
0.021
1
6mer
524-547
0.004
2
DNAJC9-AS1
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000440197
Biotype: antisense
Gene id: ENSG00000236756
Gene Name: DNAJC9-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
43-67
0.009
1
7mer
2301-2323
0.007
2
6mer
2463-2482
0.003
2
6mer
2059-2077
0.002
1
6mer
948-974
0.002
1
7mer
984-1011
0.001
Not Conserved
6mer
1087-1108
0.001
1
RP11-374P20.4
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000412181
Biotype: antisense
Gene id: ENSG00000235138
Gene Name: RP11-374P20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1846-1868
0.009
1
7mer
857-862
0.009
1
7mer
324-346
0.004
0
7mer
1017-1039
0.002
0
RP11-244N9.6
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000451595
Biotype: antisense
Gene id: ENSG00000228174
Gene Name: RP11-244N9.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1112-1123
0.010
3
7mer
576-598
0.009
0
6mer
826-850
0.004
1
6mer
725-733
0.002
0
LOC401557
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_046107.1
Biotype: lincRNA
Gene id: NR_046107.1 (gene)
Gene Name: LOC401557
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1916-1943
0.004
1
8mer
2056-2071
0.004
3
8mer
1007-1029
0.004
0
6mer
3440-3455
0.003
1
6mer
345-364
0.003
1
6mer
844-861
0.002
1
6mer
3419-3444
0.002
1
6mer
1677-1692
0.001
1
6mer
2608-2632
0.001
1
6mer
2085-2102
0.001
1
TMEM51-AS1
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000310916
Biotype: antisense
Gene id: ENSG00000175147
Gene Name: TMEM51-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
7026-7036
0.006
1
6mer
680-699
0.004
3
6mer
963-978
0.003
3
6mer
6556-6583
0.003
1
6mer
6277-6300
0.002
1
6mer
657-679
0.002
3
6mer
6516-6531
0.002
2
6mer
4897-4917
0.002
1
6mer
3730-3734
0.001
1
6mer
2444-2468
0.001
Not Conserved
RP11-245J24.1
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000431695
Biotype: lincRNA
Gene id: ENSG00000238276
Gene Name: RP11-245J24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
407-428
0.020
1
6mer
173-197
0.005
3
RP11-1149O23.3
hsa-miR-657
0.705
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000500853
Biotype: antisense
Gene id: ENSG00000246582
Gene Name: RP11-1149O23.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1422-1440
0.011
Not Conserved
6mer
350-376
0.006
1
6mer
1052-1078
0.003
0
7mer
1088-1115
0.002
0
6mer
842-862
0.002
0
RP11-638I8.1
hsa-miR-657
0.704
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609439
Biotype: lincRNA
Gene id: ENSG00000272556
Gene Name: RP11-638I8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
200-224
0.009
1
6mer
337-359
0.006
1
6mer
438-460
0.005
0
6mer
471-496
0.003
0
6mer
468-492
0.003
0
RP11-1113L8.1
hsa-miR-657
0.704
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000574267
Biotype: antisense
Gene id: ENSG00000262769
Gene Name: RP11-1113L8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
57-78
0.018
1
6mer
425-441
0.004
1
6mer
696-721
0.003
1
XLOC_009106
hsa-miR-657
0.704
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019273
Biotype: transcript isomorph
Gene id: XLOC_009106
Gene Name: XLOC_009106
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
587-614
0.010
Not Conserved
6mer
519-544
0.010
0
6mer
246-251
0.005
0
RP11-344E13.3
hsa-miR-657
0.703
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581958
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-224
0.016
0
6mer
289-300
0.004
0
8mer
172-192
0.003
0
6mer
712-735
0.002
Not Conserved
LOC100506526
hsa-miR-657
0.703
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_105000.1
Biotype: lincRNA
Gene id: NR_105000.1 (gene)
Gene Name: LOC100506526
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-61
0.017
9
6mer
989-1012
0.004
3
6mer
376-394
0.003
1
RP11-273B19.2
hsa-miR-657
0.703
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512898
Biotype: lincRNA
Gene id: ENSG00000249727
Gene Name: RP11-273B19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
596-617
0.025
1
C21orf67
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000615847
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
396-423
0.005
1
6mer
1559-1586
0.004
1
6mer
1220-1239
0.003
0
6mer
1563-1586
0.003
0
6mer
1183-1206
0.003
0
6mer
311-335
0.002
1
6mer
1567-1586
0.002
Not Conserved
6mer
1077-1092
0.002
0
RP11-322D14.2
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562970
Biotype: antisense
Gene id: ENSG00000260145
Gene Name: RP11-322D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
335-354
0.025
0
RP11-132A1.3
hsa-miR-657
0.702
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000429254
Biotype: antisense
Gene id: ENSG00000232301
Gene Name: RP11-132A1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
537-564
0.025
1
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