LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
BDNF-AS
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033315.1
Biotype: antisense
Gene id: NR_033315.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-479
0.019
6
6mer
40-63
0.004
1
6mer
674-694
0.002
1
RP11-264B17.3
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000569969
Biotype: retained_intron
Gene id: ENSG00000261067
Gene Name: RP11-264B17.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1820-1839
0.006
6
7mer
4894-4919
0.005
1
7mer
4089-4101
0.002
3
6mer
4776-4801
0.002
3
6mer
2108-2134
0.002
9
6mer
3892-3918
0.001
0
6mer
3410-3430
0.001
0
6mer
4129-4148
0.001
6
6mer
1294-1311
0.001
0
6mer
3144-3170
0.001
7
6mer
2432-2458
0.001
1
6mer
3176-3200
0.001
4
6mer
3073-3100
0.001
1
6mer
3440-3462
0.000
0
7mer
3426-3448
0.000
0
XLOC_013541
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028182
Biotype: transcript isomorph
Gene id: XLOC_013541
Gene Name: XLOC_013541
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
256-279
0.011
3
7mer
397-413
0.009
1
7mer
1068-1086
0.005
1
RP11-212D3.4
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000413763
Biotype: lincRNA
Gene id: ENSG00000226854
Gene Name: RP11-212D3.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
393-410
0.025
0
CTD-2215E18.1
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504578
Biotype: lincRNA
Gene id: ENSG00000251513
Gene Name: CTD-2215E18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1318-1336
0.014
1
6mer
1480-1500
0.005
1
6mer
1205-1226
0.003
2
6mer
1020-1045
0.003
1
XLOC_011135
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022881
Biotype: transcript isomorph
Gene id: XLOC_011135
Gene Name: XLOC_011135
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
459-483
0.017
2
6mer
306-320
0.005
2
6mer
155-181
0.004
1
DKFZp434L192
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026929.1
Biotype: lincRNA
Gene id: NR_026929.1 (gene)
Gene Name: DKFZp434L192
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-142
0.025
0
CTA-243E7.1
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
12967-12988
0.003
0
7mer
8555-8568
0.003
3
6mer
11167-11179
0.002
1
6mer
12327-12346
0.002
2
6mer
6674-6698
0.002
1
6mer
7932-7936
0.002
1
6mer
2034-2060
0.001
0
6mer
7291-7312
0.001
Not Conserved
6mer
1837-1860
0.001
1
7mer
9546-9566
0.001
1
6mer
9573-9600
0.001
Not Conserved
6mer
2717-2741
0.001
0
6mer
6049-6057
0.001
0
6mer
7502-7526
0.001
1
6mer
7574-7598
0.001
2
6mer
6606-6626
0.001
0
6mer
7265-7288
0.001
1
6mer
1994-2016
0.001
0
TEX26-AS1
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000588425
Biotype: antisense
Gene id: ENSG00000224743
Gene Name: TEX26-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
316-338
0.016
0
6mer
1025-1048
0.005
1
6mer
348-352
0.003
1
GS1-24F4.3
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000526235
Biotype: antisense
Gene id: ENSG00000254625
Gene Name: GS1-24F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
73-91
0.025
0
EGOT
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000414938
Biotype: lincRNA
Gene id: ENSG00000235947
Gene Name: EGOT
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1136-1153
0.025
5
XLOC_003503
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007384
Biotype: transcript isomorph
Gene id: XLOC_003503
Gene Name: XLOC_003503
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
181-202
0.019
0
7mer
215-232
0.007
0
RP11-703M24.5
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000581172
Biotype: antisense
Gene id: ENSG00000266049
Gene Name: RP11-703M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
154-177
0.015
1
7mer
631-658
0.010
0
A1BG-AS1
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594950
Biotype: antisense
Gene id: ENSG00000268895
Gene Name: A1BG-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1635-1654
0.015
1
6mer
84-104
0.004
3
6mer
1181-1191
0.003
1
6mer
546-569
0.002
0
6mer
649-676
0.001
Not Conserved
LINC00881
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000474477
Biotype: lincRNA
Gene id: ENSG00000241135
Gene Name: LINC00881
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Heart Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
398-422
0.019
1
6mer
294-317
0.006
4
RP5-965G21.4
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618303
Biotype: lincRNA
Gene id: ENSG00000274414
Gene Name: RP5-965G21.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-801
0.017
1
6mer
1709-1725
0.004
1
6mer
125-146
0.004
0
XLOC_006309
hsa-miR-657
0.708
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013653
Biotype: transcript isomorph
Gene id: XLOC_006309
Gene Name: XLOC_006309
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
914-923
0.025
2
RP11-592N21.2
hsa-miR-657
0.707
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000562681
Biotype: sense_intronic
Gene id: ENSG00000260586
Gene Name: RP11-592N21.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
530-549
0.016
0
6mer
670-695
0.009
3
CTD-2515O10.5
hsa-miR-657
0.707
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000617969
Biotype: antisense
Gene id: ENSG00000274904
Gene Name: CTD-2515O10.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
353-372
0.013
8
6mer
394-415
0.005
4
6mer
70-97
0.003
2
6mer
477-495
0.003
4
6mer
209-234
0.001
1
LRRC2-AS1
hsa-miR-657
0.706
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_073385.1
Biotype: antisense
Gene id: NR_073385.1 (gene)
Gene Name: LRRC2-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-115
0.025
1
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