LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-657


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_008765
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017944
Biotype: transcript isomorph
Gene id: XLOC_008765
Gene Name: XLOC_008765
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
422-441
0.026
1
XLOC_000730
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000016
Biotype: transcript isomorph
Gene id: XLOC_000730
Gene Name: XLOC_000730
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5199-5221
0.006
1
8mer
1414-1435
0.005
1
7mer
4799-4825
0.004
1
6mer
641-665
0.003
1
6mer
3940-3966
0.002
1
6mer
3320-3337
0.002
0
6mer
4200-4218
0.001
2
6mer
3653-3675
0.001
Not Conserved
6mer
2453-2475
0.001
0
6mer
3607-3622
0.001
0
RP11-114G22.1
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540994
Biotype: lincRNA
Gene id: ENSG00000256995
Gene Name: RP11-114G22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
137-158
0.026
8
RP11-504P24.8
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000608760
Biotype: lincRNA
Gene id: ENSG00000272645
Gene Name: RP11-504P24.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
417-441
0.006
1
6mer
304-327
0.005
1
6mer
203-225
0.005
0
6mer
707-728
0.004
0
6mer
167-192
0.004
0
6mer
452-470
0.003
Not Conserved
RAD51L3-RFFL
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037714.1
Biotype: sense
Gene id: NR_037714.1 (gene)
Gene Name: RAD51L3-RFFL
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3365-3390
0.013
7
7mer
680-702
0.006
0
6mer
3745-3761
0.004
4
6mer
1545-1571
0.002
0
RP3-508I15.9
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000444381
Biotype: antisense
Gene id: ENSG00000228274
Gene Name: RP3-508I15.9
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
727-752
0.007
1
6mer
1044-1061
0.007
4
6mer
519-542
0.005
7
7mer
894-913
0.005
1
6mer
480-497
0.003
3
RP11-132N15.3
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000423643
Biotype: lincRNA
Gene id: ENSG00000224187
Gene Name: RP11-132N15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
296-320
0.016
7
9mer
150-177
0.009
0
RP11-321L2.1
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423440
Biotype: lincRNA
Gene id: ENSG00000231460
Gene Name: RP11-321L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
928-940
0.014
2
7mer
444-468
0.009
2
6mer
499-523
0.002
Not Conserved
XLOC_007301
hsa-miR-657
0.712
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015656
Biotype: transcript isomorph
Gene id: XLOC_007301
Gene Name: XLOC_007301
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
925-937
0.014
2
7mer
441-465
0.009
2
6mer
496-520
0.002
Not Conserved
RP11-61I13.3
hsa-miR-657
0.711
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607215
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2560-2582
0.008
2
6mer
489-514
0.007
5
6mer
2929-2949
0.007
10
6mer
2267-2283
0.002
0
6mer
1179-1200
0.001
0
RP11-1348G14.4
hsa-miR-657
0.711
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000507031
Biotype: lincRNA
Gene id: ENSG00000251417
Gene Name: RP11-1348G14.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
29-47
0.004
0
6mer
1543-1566
0.004
0
6mer
43-51
0.004
0
6mer
1182-1208
0.003
0
6mer
514-523
0.003
Not Conserved
6mer
336-362
0.002
Not Conserved
6mer
881-907
0.002
Not Conserved
6mer
1322-1343
0.002
0
6mer
1019-1042
0.001
0
6mer
917-944
0.001
Not Conserved
RP11-680A11.5
hsa-miR-657
0.711
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550263
Biotype: antisense
Gene id: ENSG00000257605
Gene Name: RP11-680A11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-84
0.016
0
7mer
251-274
0.006
1
6mer
386-412
0.004
1
CTD-2071N1.1
hsa-miR-657
0.711
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000559749
Biotype: antisense
Gene id: ENSG00000259213
Gene Name: CTD-2071N1.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-61
0.014
2
6mer
696-706
0.003
0
6mer
328-350
0.003
2
6mer
328-355
0.003
1
6mer
205-231
0.002
1
DNAJC9-AS1
hsa-miR-657
0.710
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: NR_038373.1
Biotype: antisense
Gene id: NR_038373.1 (gene)
Gene Name: DNAJC9-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
36-60
0.009
1
7mer
2294-2316
0.007
2
6mer
2456-2475
0.003
2
6mer
2052-2070
0.002
1
6mer
941-967
0.002
1
7mer
977-1004
0.001
Not Conserved
6mer
1080-1101
0.001
1
RP11-476H20.1
hsa-miR-657
0.710
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000435554
Biotype: lincRNA
Gene id: ENSG00000231714
Gene Name: RP11-476H20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
370-396
0.021
0
6mer
338-364
0.004
0
XLOC_008683
hsa-miR-657
0.710
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018398
Biotype: transcript isomorph
Gene id: XLOC_008683
Gene Name: XLOC_008683
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
672-694
0.017
1
6mer
627-652
0.005
0
6mer
496-509
0.004
1
RP3-429O6.1
hsa-miR-657
0.710
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422310
Biotype: lincRNA
Gene id: ENSG00000223342
Gene Name: RP3-429O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
757-780
0.012
1
7mer
655-681
0.005
0
6mer
650-659
0.004
1
6mer
633-650
0.004
0
RP11-497E19.1
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000380722
Biotype: lincRNA
Gene id: ENSG00000205562
Gene Name: RP11-497E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
979-1005
0.021
6
6mer
1100-1124
0.005
5
XLOC_006058
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013423
Biotype: transcript isomorph
Gene id: XLOC_006058
Gene Name: XLOC_006058
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
91-117
0.025
1
BDNF-AS
hsa-miR-657
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500662
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-479
0.019
6
6mer
40-63
0.004
1
6mer
674-694
0.002
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept