LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
NPTN-IT1
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: NR_103844.1
Biotype: sense
Gene id: NR_103844.1 (gene)
Gene Name: NPTN-IT1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1697-1719
0.012
1
6mer
375-397
0.005
Not Conserved
7mer
1195-1216
0.004
3
6mer
734-750
0.003
1
6mer
2089-2108
0.003
3
CECR7
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000441006
Biotype: lincRNA
Gene id: ENSG00000237438
Gene Name: CECR7
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
87-106
0.005
1
6mer
1567-1589
0.005
1
6mer
87-110
0.004
1
6mer
1944-1969
0.003
1
6mer
2338-2364
0.003
0
6mer
1661-1680
0.002
1
6mer
1843-1861
0.002
0
6mer
1179-1205
0.002
0
LINC00661
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000547102
Biotype: lincRNA
Gene id: ENSG00000205396
Gene Name: LINC00661
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
414-421
0.026
1
CPB2-AS1
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000606991
Biotype: antisense
Gene id: ENSG00000235903
Gene Name: CPB2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2527-2545
0.011
1
7mer
794-811
0.010
0
6mer
3103-3123
0.004
1
AC096574.5
hsa-miR-657
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000417947
Biotype: lincRNA
Gene id: ENSG00000227107
Gene Name: AC096574.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-60
0.009
Not Conserved
6mer
1802-1812
0.006
1
6mer
1911-1930
0.006
1
6mer
1808-1823
0.003
1
6mer
1255-1273
0.002
3
XLOC_013591
hsa-miR-657
0.715
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028248
Biotype: transcript isomorph
Gene id: XLOC_013591
Gene Name: XLOC_013591
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1045-1061
0.009
0
6mer
251-256
0.007
1
7mer
1058-1070
0.006
Not Conserved
6mer
761-783
0.004
1
AC092614.2
hsa-miR-657
0.715
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000419640
Biotype: lincRNA
Gene id: ENSG00000227542
Gene Name: AC092614.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
109-135
0.019
0
6mer
11-31
0.004
1
6mer
769-773
0.003
0
ZSCAN16-AS1
hsa-miR-657
0.715
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000602810
Biotype: antisense
Gene id: ENSG00000269293
Gene Name: ZSCAN16-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
861-880
0.019
1
6mer
722-741
0.003
1
6mer
615-635
0.002
1
6mer
680-699
0.002
0
XLOC_001856
hsa-miR-657
0.714
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004018
Biotype: transcript isomorph
Gene id: XLOC_001856
Gene Name: XLOC_001856
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
892-912
0.014
1
6mer
226-245
0.008
4
6mer
464-489
0.004
2
SHANK3
hsa-miR-657
0.714
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000262795
Biotype: processed_transcript
Gene id: ENSG00000251322
Gene Name: SHANK3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
240-256
0.004
4
9mer
3826-3853
0.004
5
6mer
750-774
0.004
5
6mer
5210-5229
0.002
7
6mer
6060-6082
0.002
7
6mer
3185-3202
0.001
5
6mer
795-808
0.001
4
6mer
6706-6729
0.001
1
6mer
6083-6109
0.001
2
6mer
3734-3751
0.001
4
6mer
4018-4040
0.001
4
6mer
4354-4379
0.001
3
6mer
5956-5982
0.001
1
7mer
3834-3860
0.001
1
6mer
5251-5274
0.000
1
LINC01366
hsa-miR-657
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000436248
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
735-751
0.026
2
RP11-473J6.1
hsa-miR-657
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000524167
Biotype: lincRNA
Gene id: ENSG00000253452
Gene Name: RP11-473J6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-207
0.008
0
6mer
484-504
0.007
1
7mer
441-468
0.007
0
6mer
337-363
0.004
0
RP11-386G11.5
hsa-miR-657
0.714
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547866
Biotype: antisense
Gene id: ENSG00000257913
Gene Name: RP11-386G11.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
765-783
0.013
3
6mer
13-36
0.004
2
6mer
1185-1203
0.003
3
6mer
1545-1568
0.002
3
6mer
967-992
0.002
3
6mer
1230-1253
0.001
3
XLOC_009868
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020555
Biotype: transcript isomorph
Gene id: XLOC_009868
Gene Name: XLOC_009868
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2283-2302
0.019
0
6mer
156-173
0.006
1
LINC00408
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000447784
Biotype: lincRNA
Gene id: ENSG00000226250
Gene Name: LINC00408
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-526
0.026
0
XLOC_006253
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013599
Biotype: transcript isomorph
Gene id: XLOC_006253
Gene Name: XLOC_006253
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
365-386
0.012
0
7mer
1068-1092
0.005
2
6mer
789-812
0.003
1
6mer
575-599
0.003
1
6mer
1502-1519
0.002
0
6mer
3798-3820
0.001
Not Conserved
XLOC_004192
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008673
Biotype: transcript isomorph
Gene id: XLOC_004192
Gene Name: XLOC_004192
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3975-3999
0.011
8
6mer
265-289
0.004
2
6mer
583-604
0.003
1
7mer
410-435
0.003
1
6mer
1047-1066
0.002
1
6mer
2615-2637
0.001
0
CTA-243E7.3
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624101
Biotype: antisense
Gene id: ENSG00000279548
Gene Name: CTA-243E7.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
976-998
0.007
1
7mer
1207-1227
0.005
Not Conserved
7mer
1736-1741
0.005
1
6mer
1778-1797
0.004
3
6mer
519-545
0.004
1
RP11-44N21.1
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000546968
Biotype: lincRNA
Gene id: ENSG00000257556
Gene Name: RP11-44N21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
71-97
0.022
0
6mer
435-440
0.003
1
XLOC_013639
hsa-miR-657
0.713
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028604
Biotype: transcript isomorph
Gene id: XLOC_013639
Gene Name: XLOC_013639
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
201-226
0.018
1
7mer
290-315
0.008
1
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