LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
FAM66C
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535567
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
575-592
0.009
0
6mer
222-243
0.008
0
6mer
367-393
0.006
0
6mer
424-446
0.002
Not Conserved
AC091814.3
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000420905
Biotype: lincRNA
Gene id: ENSG00000231560
Gene Name: AC091814.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
336-351
0.021
0
6mer
3081-3094
0.004
1
6mer
2335-2360
0.002
1
KB-1183D5.18
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624642
Biotype: lincRNA
Gene id: ENSG00000279920
Gene Name: KB-1183D5.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-141
0.026
0
CTD-3074O7.12
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000602427
Biotype: lincRNA
Gene id: ENSG00000269990
Gene Name: CTD-3074O7.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1556-1580
0.008
0
6mer
563-586
0.004
1
6mer
1935-1961
0.004
0
7mer
744-767
0.004
1
7mer
1801-1822
0.004
Not Conserved
6mer
1898-1917
0.003
0
LINC01359
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447748
Biotype: lincRNA
Gene id: ENSG00000226891
Gene Name: LINC01359
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1533-1538
0.011
1
6mer
2596-2608
0.005
0
6mer
2585-2608
0.004
0
7mer
2548-2575
0.003
Not Conserved
6mer
800-826
0.003
1
RP11-248M19.1
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000618070
Biotype: lincRNA
Gene id: ENSG00000278075
Gene Name: RP11-248M19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
134-154
0.009
1
7mer
264-285
0.008
0
6mer
210-233
0.005
0
6mer
150-172
0.004
0
HCG18
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000412685
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
458-480
0.022
0
6mer
1546-1565
0.002
1
6mer
1345-1363
0.002
1
LINC00534
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000517400
Biotype: lincRNA
Gene id: ENSG00000253394
Gene Name: LINC00534
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
192-209
0.026
4
RP11-405M12.4
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000613588
Biotype: lincRNA
Gene id: ENSG00000273669
Gene Name: RP11-405M12.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
282-305
0.011
1
6mer
59-69
0.008
0
6mer
530-551
0.007
0
RP11-1036E20.9
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000399003
Biotype: lincRNA
Gene id: ENSG00000214797
Gene Name: RP11-1036E20.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2408-2413
0.013
1
7mer
420-438
0.004
1
6mer
808-814
0.003
1
7mer
1417-1438
0.003
1
6mer
1904-1927
0.002
1
6mer
1339-1360
0.001
1
U91319.1
hsa-miR-657
0.718
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571619
Biotype: lincRNA
Gene id: ENSG00000262801
Gene Name: U91319.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
582-600
0.021
1
6mer
177-203
0.005
0
XLOC_001826
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003088
Biotype: transcript isomorph
Gene id: XLOC_001826
Gene Name: XLOC_001826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
238-243
0.011
2
7mer
1037-1063
0.007
1
6mer
1105-1128
0.006
1
6mer
993-1009
0.002
1
LINC01486
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000538041
Biotype: lincRNA
Gene id: ENSG00000256560
Gene Name: LINC01486
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
561-566
0.016
8
6mer
684-700
0.010
6
C21orf67
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000330551
Biotype: lincRNA
Gene id: ENSG00000183250
Gene Name: C21orf67
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
213-240
0.007
1
6mer
197-217
0.005
1
6mer
459-478
0.005
1
6mer
217-240
0.003
0
6mer
566-593
0.002
0
6mer
574-593
0.002
Not Conserved
6mer
221-240
0.002
Not Conserved
PDXDC2P
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000525331
Biotype: processed_transcript
Gene id: ENSG00000196696
Gene Name: PDXDC2P
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
848-872
0.011
6
7mer
214-239
0.009
Not Conserved
7mer
109-124
0.003
Not Conserved
6mer
181-193
0.002
Not Conserved
RP11-756P10.2
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000514297
Biotype: lincRNA
Gene id: ENSG00000250626
Gene Name: RP11-756P10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
75-96
0.021
1
6mer
281-304
0.005
1
AP000997.2
hsa-miR-657
0.717
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000564619
Biotype: lincRNA
Gene id: ENSG00000260254
Gene Name: AP000997.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
8365-8370
0.010
0
6mer
8296-8321
0.004
1
6mer
7519-7541
0.003
5
6mer
6350-6361
0.003
7
7mer
4349-4375
0.002
0
6mer
3813-3831
0.002
3
6mer
5472-5496
0.002
4
6mer
4487-4511
0.000
1
AC124789.1
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617990
Biotype: antisense
Gene id: ENSG00000276170
Gene Name: AC124789.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
644-663
0.008
1
7mer
577-601
0.006
0
6mer
369-373
0.005
2
6mer
288-310
0.004
0
6mer
587-613
0.003
2
XLOC_001259
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000762
Biotype: transcript isomorph
Gene id: XLOC_001259
Gene Name: XLOC_001259
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-77
0.016
3
7mer
822-834
0.005
0
6mer
594-619
0.003
0
6mer
1440-1460
0.002
0
XLOC_001726
hsa-miR-657
0.716
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003921
Biotype: transcript isomorph
Gene id: XLOC_001726
Gene Name: XLOC_001726
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-74
0.012
1
9mer
1023-1041
0.011
0
6mer
1062-1078
0.003
1
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