LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-23J9.4
hsa-miR-657
0.723
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000534123
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6301-6322
0.007
1
6mer
5451-5467
0.005
8
6mer
6405-6425
0.004
3
8mer
5293-5318
0.003
1
6mer
872-889
0.003
7
6mer
3887-3907
0.002
7
6mer
2352-2375
0.001
4
RP11-1057B8.2
hsa-miR-657
0.722
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000505083
Biotype: lincRNA
Gene id: ENSG00000251218
Gene Name: RP11-1057B8.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-643
0.015
0
7mer
1309-1331
0.007
1
6mer
249-276
0.004
1
SPECC1L-ADORA2A
hsa-miR-657
0.722
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_103546.1
Biotype: sense
Gene id: NR_103546.1 (gene)
Gene Name: SPECC1L-ADORA2A
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4268-4290
0.010
10
7mer
519-545
0.006
3
6mer
558-577
0.003
6
6mer
5773-5800
0.002
2
6mer
3577-3597
0.002
3
6mer
3030-3053
0.001
1
6mer
3198-3218
0.001
0
6mer
4376-4401
0.001
6
RP11-680F8.1
hsa-miR-657
0.722
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000536835
Biotype: antisense
Gene id: ENSG00000256802
Gene Name: RP11-680F8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-525
0.008
0
6mer
2422-2445
0.004
1
6mer
149-171
0.003
0
6mer
167-194
0.003
1
6mer
566-582
0.002
0
6mer
19-39
0.002
0
6mer
1407-1430
0.001
0
6mer
1652-1673
0.001
1
6mer
1418-1435
0.001
0
6mer
1567-1591
0.001
0
RP11-266L9.5
hsa-miR-657
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000571219
Biotype: lincRNA
Gene id: ENSG00000262155
Gene Name: RP11-266L9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1712-1733
0.018
3
7mer
1825-1830
0.009
0
RP11-164J13.1
hsa-miR-657
0.721
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000466369
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2616-2633
0.007
8
6mer
896-920
0.004
6
6mer
2562-2582
0.004
8
7mer
3265-3290
0.003
0
6mer
3192-3213
0.003
1
6mer
1030-1056
0.002
4
6mer
2043-2069
0.002
6
6mer
2131-2157
0.001
9
BDNF-AS
hsa-miR-657
0.721
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000499568
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-479
0.020
6
6mer
40-63
0.004
1
6mer
1238-1258
0.002
1
BDNF-AS
hsa-miR-657
0.721
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_033312.1
Biotype: antisense
Gene id: NR_033312.1 (gene)
Gene Name: BDNF-AS
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
466-479
0.020
6
6mer
40-63
0.004
1
6mer
1238-1258
0.002
1
RP11-452C8.1
hsa-miR-657
0.721
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506460
Biotype: lincRNA
Gene id: ENSG00000248408
Gene Name: RP11-452C8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
636-640
0.006
0
6mer
658-675
0.006
1
6mer
370-380
0.005
1
6mer
422-449
0.005
1
6mer
469-488
0.004
1
TPT1-AS1
hsa-miR-657
0.721
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000521507
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
584-611
0.007
0
6mer
71-94
0.005
0
6mer
442-469
0.005
0
7mer
505-532
0.005
0
7mer
374-390
0.005
0
RP11-160E2.17
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000439868
Biotype: lincRNA
Gene id: ENSG00000230197
Gene Name: RP11-160E2.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-356
0.019
0
6mer
64-87
0.007
0
RP11-363G10.2
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000375625
Biotype: lincRNA
Gene id: ENSG00000179028
Gene Name: RP11-363G10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
510-525
0.006
1
7mer
1403-1419
0.006
2
6mer
1725-1743
0.005
1
6mer
570-589
0.003
0
6mer
743-767
0.003
1
6mer
846-866
0.002
1
6mer
949-971
0.001
0
XLOC_010972
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022677
Biotype: transcript isomorph
Gene id: XLOC_010972
Gene Name: XLOC_010972
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
754-760
0.026
1
RP4-539M6.22
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000366413
Biotype: pseudogene
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
116-143
0.004
2
6mer
139-164
0.004
1
6mer
368-393
0.003
1
6mer
272-290
0.003
0
6mer
416-435
0.003
1
6mer
64-78
0.003
Not Conserved
6mer
227-248
0.002
0
6mer
307-332
0.002
0
6mer
206-227
0.002
0
XLOC_011292
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023265
Biotype: transcript isomorph
Gene id: XLOC_011292
Gene Name: XLOC_011292
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
963-983
0.012
1
6mer
1380-1406
0.003
0
6mer
509-525
0.003
1
6mer
645-663
0.002
2
6mer
789-814
0.002
0
6mer
537-562
0.002
1
6mer
652-673
0.002
3
CTD-2516F10.2
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530169
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
183-205
0.022
2
6mer
466-487
0.004
1
XLOC_013064
hsa-miR-657
0.720
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027536
Biotype: transcript isomorph
Gene id: XLOC_013064
Gene Name: XLOC_013064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2375-2401
0.012
1
9mer
896-923
0.009
0
6mer
1125-1150
0.004
0
LOC100507387
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038402.1
Biotype: sense
Gene id: NR_038402.1 (gene)
Gene Name: LOC100507387
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
673-694
0.019
1
6mer
762-776
0.007
0
RP11-160E2.16
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000447506
Biotype: lincRNA
Gene id: ENSG00000236022
Gene Name: RP11-160E2.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
342-356
0.019
0
6mer
64-87
0.007
0
RP11-307C19.3
hsa-miR-657
0.719
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558691
Biotype: antisense
Gene id: ENSG00000259666
Gene Name: RP11-307C19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1389-1411
0.013
3
7mer
41-59
0.011
1
6mer
64-84
0.003
2
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