LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
TTTY15
hsa-miR-657
0.968
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
697-724
0.023
0
7mer
594-599
0.022
0
6mer
1072-1095
0.009
0
6mer
4116-4139
0.008
0
6mer
1095-1117
0.005
0
XIST
hsa-miR-657
0.968
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000429829
Biotype: lincRNA
Gene id: ENSG00000229807
Gene Name: XIST
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
18838-18861
0.016
4
8mer
980-1000
0.007
Not Conserved
6mer
18593-18616
0.006
7
6mer
18793-18816
0.005
4
6mer
18549-18572
0.004
6
6mer
18748-18771
0.003
4
6mer
18641-18664
0.003
0
6mer
9327-9343
0.003
4
7mer
5488-5510
0.003
1
6mer
16485-16494
0.003
3
6mer
16041-16064
0.002
1
6mer
17064-17080
0.002
3
7mer
8408-8421
0.002
0
6mer
12046-12067
0.001
0
6mer
6602-6627
0.001
1
6mer
12639-12661
0.001
0
6mer
11466-11486
0.001
1
6mer
11757-11778
0.001
0
6mer
16397-16423
0.001
0
6mer
16481-16489
0.001
0
RP11-400F19.8
hsa-miR-657
0.967
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585572
Biotype: processed_transcript
Gene id: ENSG00000266929
Gene Name: RP11-400F19.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
454-479
0.027
0
7mer
214-236
0.013
8
6mer
17-42
0.007
10
6mer
265-290
0.006
7
6mer
181-205
0.005
6
6mer
68-94
0.004
7
6mer
233-258
0.004
9
LINC01224
hsa-miR-657
0.966
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593573
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
442-453
0.042
1
6mer
608-630
0.013
1
6mer
524-546
0.010
1
TTTY15
hsa-miR-657
0.962
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000440408
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-757
0.023
0
7mer
627-632
0.022
0
6mer
1105-1128
0.009
0
6mer
4149-4172
0.006
0
6mer
1128-1150
0.005
0
XLOC_008295
hsa-miR-657
0.961
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017578
Biotype: transcript isomorph
Gene id: XLOC_008295
Gene Name: XLOC_008295
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
730-757
0.022
0
7mer
627-632
0.022
0
6mer
1105-1128
0.008
0
6mer
4149-4172
0.006
0
6mer
1128-1150
0.005
0
RP11-359B12.2
hsa-miR-657
0.958
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503602
Biotype: antisense
Gene id: ENSG00000250132
Gene Name: RP11-359B12.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-245
0.054
0
7mer
1957-1978
0.005
0
6mer
2282-2308
0.003
1
RP11-810P12.5
hsa-miR-657
0.957
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000524942
Biotype: lincRNA
Gene id: ENSG00000255553
Gene Name: RP11-810P12.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
591-603
0.030
0
8mer
232-251
0.023
0
6mer
759-785
0.005
0
6mer
651-674
0.004
0
XLOC_013499
hsa-miR-657
0.957
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028139
Biotype: transcript isomorph
Gene id: XLOC_013499
Gene Name: XLOC_013499
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
230-252
0.061
0
AC006019.3
hsa-miR-657
0.956
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425591
Biotype: antisense
Gene id: ENSG00000203335
Gene Name: AC006019.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2397-2419
0.017
Not Conserved
7mer
2436-2456
0.012
Not Conserved
7mer
461-483
0.011
0
7mer
500-520
0.009
0
7mer
2333-2350
0.004
Not Conserved
7mer
395-412
0.003
0
7mer
1623-1640
0.002
Not Conserved
6mer
1880-1902
0.001
Not Conserved
6mer
1772-1797
0.001
Not Conserved
6mer
1411-1435
0.001
Not Conserved
6mer
1250-1274
0.001
0
XLOC_005951
hsa-miR-657
0.955
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011629
Biotype: transcript isomorph
Gene id: XLOC_005951
Gene Name: XLOC_005951
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
42-67
0.026
1
7mer
412-437
0.015
1
7mer
353-373
0.011
0
7mer
294-314
0.009
0
RP11-13K12.1
hsa-miR-657
0.954
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000591283
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-412
0.007
1
7mer
4482-4494
0.006
0
7mer
4300-4325
0.004
Not Conserved
7mer
4350-4375
0.003
0
6mer
531-554
0.002
0
7mer
3770-3795
0.002
0
7mer
4406-4431
0.002
Not Conserved
7mer
4194-4219
0.002
0
7mer
4244-4269
0.002
0
7mer
4088-4113
0.002
Not Conserved
7mer
3929-3954
0.002
0
7mer
2869-2894
0.002
0
7mer
4141-4166
0.002
Not Conserved
7mer
3399-3424
0.002
0
7mer
3823-3848
0.001
0
7mer
4035-4060
0.001
0
7mer
3081-3106
0.001
0
7mer
3982-4007
0.001
Not Conserved
7mer
3876-3901
0.001
0
7mer
3664-3689
0.001
0
6mer
1905-1923
0.001
1
7mer
3611-3636
0.001
0
7mer
3558-3583
0.001
0
7mer
3452-3477
0.001
0
7mer
2975-3000
0.001
0
7mer
3293-3318
0.001
0
7mer
3028-3053
0.001
0
7mer
3346-3371
0.001
0
6mer
1658-1681
0.001
0
7mer
2922-2947
0.001
0
7mer
3134-3159
0.001
0
7mer
3240-3265
0.001
0
7mer
3187-3212
0.001
0
7mer
3505-3530
0.001
Not Conserved
6mer
3717-3742
0.001
Not Conserved
XLOC_003650
hsa-miR-657
0.952
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008198
Biotype: transcript isomorph
Gene id: XLOC_003650
Gene Name: XLOC_003650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
786-802
0.036
2
8mer
593-616
0.014
1
7mer
559-577
0.010
0
RP4-760C5.5
hsa-miR-657
0.951
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000449316
Biotype: lincRNA
Gene id: ENSG00000226203
Gene Name: RP4-760C5.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
110-133
0.023
1
7mer
4368-4394
0.017
0
7mer
3250-3277
0.005
0
7mer
3431-3447
0.004
Not Conserved
7mer
2057-2076
0.004
0
6mer
3595-3621
0.003
0
6mer
2746-2760
0.002
0
XLOC_006130
hsa-miR-657
0.950
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013484
Biotype: transcript isomorph
Gene id: XLOC_006130
Gene Name: XLOC_006130
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-98
0.027
1
6mer
16-37
0.017
1
6mer
151-169
0.014
1
XLOC_013502
hsa-miR-657
0.949
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027863
Biotype: transcript isomorph
Gene id: XLOC_013502
Gene Name: XLOC_013502
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
105-128
0.023
1
7mer
4363-4389
0.016
0
7mer
3245-3272
0.005
0
7mer
3426-3442
0.004
Not Conserved
7mer
2052-2071
0.004
0
6mer
3590-3616
0.003
0
6mer
2741-2755
0.002
0
RP11-406A20.4
hsa-miR-657
0.948
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000426593
Biotype: lincRNA
Gene id: ENSG00000227555
Gene Name: RP11-406A20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
378-396
0.039
5
7mer
2364-2391
0.008
1
6mer
875-894
0.003
1
6mer
2130-2155
0.003
0
7mer
1318-1343
0.003
1
6mer
2345-2368
0.002
0
6mer
1142-1162
0.001
0
RP11-65J21.3
hsa-miR-657
0.948
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575792
Biotype: lincRNA
Gene id: ENSG00000262454
Gene Name: RP11-65J21.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
76-100
0.058
6
LINC00293
hsa-miR-657
0.947
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2133-2140
0.017
1
6mer
1411-1438
0.013
1
6mer
273-293
0.011
1
6mer
1560-1583
0.009
1
6mer
1052-1074
0.008
1
XLOC_006459
hsa-miR-657
0.946
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
688-693
0.015
0
6mer
508-535
0.014
1
6mer
497-508
0.008
1
6mer
280-302
0.007
0
6mer
378-396
0.006
0
6mer
1022-1044
0.005
0
6mer
319-345
0.002
Not Conserved
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