LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
AC159540.2
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000618807
Biotype: lincRNA
Gene id: ENSG00000278766
Gene Name: AC159540.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
644-659
0.013
Not Conserved
6mer
370-393
0.007
1
6mer
81-104
0.007
0
RP11-319E16.1
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000540237
Biotype: lincRNA
Gene id: ENSG00000256115
Gene Name: RP11-319E16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
183-207
0.020
1
6mer
132-155
0.007
5
XLOC_003861
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007369
Biotype: transcript isomorph
Gene id: XLOC_003861
Gene Name: XLOC_003861
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
252-270
0.014
1
6mer
835-852
0.006
0
7mer
515-528
0.005
Not Conserved
6mer
375-397
0.003
Not Conserved
LINC00475
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000416438
Biotype: lincRNA
Gene id: ENSG00000225511
Gene Name: LINC00475
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2214-2238
0.006
0
7mer
2271-2296
0.006
0
6mer
72-88
0.006
0
6mer
53-76
0.006
0
6mer
1179-1204
0.003
0
RP11-394A14.2
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000607822
Biotype: lincRNA
Gene id: ENSG00000219926
Gene Name: RP11-394A14.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
655-678
0.011
Not Conserved
6mer
2503-2523
0.004
Not Conserved
7mer
445-461
0.004
Not Conserved
7mer
2364-2380
0.003
Not Conserved
6mer
511-534
0.003
Not Conserved
6mer
1678-1702
0.001
Not Conserved
6mer
1599-1623
0.001
Not Conserved
RP3-513G18.2
hsa-miR-657
0.726
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508619
Biotype: lincRNA
Gene id: ENSG00000250632
Gene Name: RP3-513G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
253-271
0.014
1
6mer
836-853
0.006
0
7mer
516-529
0.005
Not Conserved
6mer
376-398
0.003
Not Conserved
C14orf23
hsa-miR-657
0.726
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000399387
Biotype: lincRNA
Gene id: ENSG00000186960
Gene Name: C14orf23
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
52-73
0.027
7
RP11-728E14.2
hsa-miR-657
0.726
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582990
Biotype: lincRNA
Gene id: ENSG00000264023
Gene Name: RP11-728E14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
205-229
0.014
1
6mer
152-173
0.013
1
RP11-13P5.1
hsa-miR-657
0.726
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000421161
Biotype: lincRNA
Gene id: ENSG00000224478
Gene Name: RP11-13P5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-94
0.017
1
6mer
710-722
0.007
1
6mer
50-67
0.003
0
AC012593.1
hsa-miR-657
0.725
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000588944
Biotype: lincRNA
Gene id: ENSG00000226994
Gene Name: AC012593.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
871-881
0.027
1
RP11-540A21.2
hsa-miR-657
0.725
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000525154
Biotype: lincRNA
Gene id: ENSG00000245522
Gene Name: RP11-540A21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1794-1800
0.013
0
7mer
1637-1650
0.006
0
7mer
1754-1774
0.005
1
6mer
2101-2119
0.003
1
RP11-798L4.1
hsa-miR-657
0.725
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000381217
Biotype: lincRNA
Gene id: ENSG00000205682
Gene Name: RP11-798L4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2017-2042
0.011
1
7mer
2051-2056
0.008
1
6mer
1597-1620
0.003
0
6mer
536-555
0.002
Not Conserved
6mer
778-797
0.002
1
XLOC_013278
hsa-miR-657
0.725
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027248
Biotype: transcript isomorph
Gene id: XLOC_013278
Gene Name: XLOC_013278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1172-1197
0.012
0
6mer
626-643
0.011
0
7mer
881-894
0.004
Not Conserved
LINC00654
hsa-miR-657
0.724
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-307
0.011
1
7mer
3296-3320
0.004
1
6mer
3232-3252
0.004
1
6mer
2863-2882
0.003
0
6mer
2855-2882
0.002
2
6mer
3084-3110
0.002
Not Conserved
6mer
2512-2531
0.002
1
RP11-211G23.2
hsa-miR-657
0.724
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000561588
Biotype: lincRNA
Gene id: ENSG00000260877
Gene Name: RP11-211G23.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
300-322
0.013
1
6mer
318-342
0.011
2
6mer
84-106
0.003
0
XLOC_000082
hsa-miR-657
0.724
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000859
Biotype: transcript isomorph
Gene id: XLOC_000082
Gene Name: XLOC_000082
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1164-1183
0.022
1
6mer
94-114
0.004
1
LINC01144
hsa-miR-657
0.724
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_024270.1
Biotype: antisense
Gene id: NR_024270.1 (gene)
Gene Name: LINC01144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1350-1375
0.013
0
7mer
160-178
0.006
0
6mer
1470-1491
0.003
0
6mer
976-989
0.003
1
6mer
770-790
0.002
0
RP11-314D7.1
hsa-miR-657
0.723
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552541
Biotype: lincRNA
Gene id: ENSG00000258294
Gene Name: RP11-314D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
486-507
0.011
0
6mer
35-57
0.006
0
6mer
603-630
0.005
2
6mer
685-701
0.004
1
XLOC_006931
hsa-miR-657
0.723
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014863
Biotype: transcript isomorph
Gene id: XLOC_006931
Gene Name: XLOC_006931
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
485-491
0.017
1
6mer
65-90
0.009
1
AF001548.5
hsa-miR-657
0.723
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000574212
Biotype: antisense
Gene id: ENSG00000263335
Gene Name: AF001548.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
737-755
0.018
4
6mer
158-177
0.007
7
6mer
232-255
0.002
0
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