LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-657


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_007528
hsa-miR-657
0.733
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016134
Biotype: transcript isomorph
Gene id: XLOC_007528
Gene Name: XLOC_007528
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
5479-5499
0.010
5
8mer
3643-3665
0.004
Not Conserved
6mer
659-682
0.003
1
7mer
3061-3076
0.003
1
6mer
907-924
0.002
0
6mer
3364-3377
0.001
0
6mer
1569-1590
0.001
1
6mer
2612-2635
0.001
1
7mer
3072-3089
0.001
0
7mer
1606-1628
0.001
1
XLOC_005278
hsa-miR-657
0.732
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011803
Biotype: transcript isomorph
Gene id: XLOC_005278
Gene Name: XLOC_005278
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3394-3414
0.010
2
6mer
997-1014
0.004
7
6mer
36-57
0.003
1
7mer
2523-2531
0.002
1
6mer
635-660
0.002
0
8mer
690-712
0.002
0
7mer
3140-3164
0.002
0
6mer
1374-1394
0.001
1
FAM95C
hsa-miR-657
0.732
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_047651.1
Biotype: sense
Gene id: NR_047651.1 (gene)
Gene Name: FAM95C
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2590-2614
0.013
1
7mer
2504-2531
0.006
0
6mer
2353-2376
0.003
0
6mer
2263-2288
0.003
0
6mer
1035-1053
0.002
0
XLOC_000966
hsa-miR-657
0.732
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000095
Biotype: transcript isomorph
Gene id: XLOC_000966
Gene Name: XLOC_000966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1690-1714
0.006
2
6mer
1815-1820
0.005
1
6mer
315-325
0.004
Not Conserved
6mer
152-172
0.004
Not Conserved
6mer
40-62
0.003
Not Conserved
6mer
246-270
0.003
Not Conserved
6mer
697-718
0.002
0
FLJ31306
hsa-miR-657
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557412
Biotype: antisense
Gene id: ENSG00000257621
Gene Name: FLJ31306
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
53-61
0.027
1
FAM170B-AS1
hsa-miR-657
0.732
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000442525
Biotype: antisense
Gene id: ENSG00000234736
Gene Name: FAM170B-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-30
0.016
0
7mer
499-519
0.011
2
LINC00174
hsa-miR-657
0.731
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000421767
Biotype: lincRNA
Gene id: ENSG00000179406
Gene Name: LINC00174
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
740-758
0.003
0
6mer
590-611
0.002
Not Conserved
6mer
3695-3715
0.002
Not Conserved
6mer
379-400
0.002
0
6mer
2527-2552
0.002
0
6mer
2179-2200
0.002
1
6mer
1094-1119
0.001
1
6mer
1885-1906
0.001
0
6mer
543-564
0.001
Not Conserved
6mer
2730-2751
0.001
0
6mer
347-367
0.001
0
6mer
3127-3147
0.001
0
6mer
2431-2448
0.001
1
6mer
1162-1182
0.001
1
6mer
995-1016
0.001
0
6mer
1294-1315
0.001
0
6mer
1384-1405
0.001
0
6mer
2494-2513
0.001
1
6mer
991-1016
0.001
0
6mer
1262-1283
0.001
0
6mer
3096-3117
0.001
0
6mer
3015-3038
0.000
0
6mer
1058-1083
0.000
Not Conserved
6mer
1158-1182
0.000
Not Conserved
XLOC_003194
hsa-miR-657
0.731
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006566
Biotype: transcript isomorph
Gene id: XLOC_003194
Gene Name: XLOC_003194
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1978-2004
0.022
6
6mer
9-23
0.005
1
XLOC_000086
hsa-miR-657
0.730
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000861
Biotype: transcript isomorph
Gene id: XLOC_000086
Gene Name: XLOC_000086
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
222-227
0.027
0
IPO9-AS1
hsa-miR-657
0.730
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413035
Biotype: antisense
Gene id: ENSG00000231871
Gene Name: IPO9-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
28-51
0.027
0
RP4-539M6.22
hsa-miR-657
0.730
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000607893
Biotype: lincRNA
Gene id: ENSG00000273428
Gene Name: RP4-539M6.22
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
116-143
0.004
2
6mer
139-164
0.004
1
6mer
272-290
0.003
0
6mer
370-395
0.003
1
6mer
418-437
0.003
1
6mer
64-78
0.003
Not Conserved
6mer
227-248
0.002
0
6mer
307-332
0.002
0
6mer
206-227
0.002
0
6mer
349-374
0.001
Not Conserved
XLOC_010206
hsa-miR-657
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020935
Biotype: transcript isomorph
Gene id: XLOC_010206
Gene Name: XLOC_010206
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
325-348
0.027
3
XLOC_009925
hsa-miR-657
0.730
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020607
Biotype: transcript isomorph
Gene id: XLOC_009925
Gene Name: XLOC_009925
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
360-377
0.018
1
6mer
163-173
0.009
0
XLOC_013583
hsa-miR-657
0.729
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00027871
Biotype: transcript isomorph
Gene id: XLOC_013583
Gene Name: XLOC_013583
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
377-401
0.012
1
6mer
987-1007
0.006
4
9mer
434-448
0.004
0
6mer
57-81
0.003
4
6mer
603-626
0.003
1
AP000350.5
hsa-miR-657
0.729
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000609510
Biotype: lincRNA
Gene id: ENSG00000273295
Gene Name: AP000350.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-197
0.021
0
7mer
3917-3940
0.004
0
6mer
3309-3330
0.001
0
6mer
1976-1996
0.001
0
SEMA3F-AS1
hsa-miR-657
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000437204
Biotype: antisense
Gene id: ENSG00000235016
Gene Name: SEMA3F-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
340-359
0.005
2
8mer
452-468
0.005
3
6mer
472-494
0.004
1
6mer
364-388
0.004
3
6mer
1225-1252
0.003
8
6mer
2231-2256
0.002
1
6mer
1686-1693
0.002
1
6mer
1874-1900
0.002
3
6mer
1664-1690
0.001
1
CTB-31O20.4
hsa-miR-657
0.728
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000593201
Biotype: antisense
Gene id: ENSG00000267244
Gene Name: CTB-31O20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
839-856
0.018
1
7mer
873-899
0.004
1
6mer
1122-1141
0.003
1
6mer
1497-1515
0.002
0
RP11-60L3.1
hsa-miR-657
0.728
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560148
Biotype: antisense
Gene id: ENSG00000259264
Gene Name: RP11-60L3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
280-302
0.013
4
6mer
1242-1257
0.005
1
6mer
298-315
0.004
5
6mer
67-85
0.003
1
6mer
311-337
0.002
1
XLOC_000036
hsa-miR-657
0.728
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001929
Biotype: transcript isomorph
Gene id: XLOC_000036
Gene Name: XLOC_000036
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
105-127
0.012
1
7mer
42-50
0.008
0
6mer
157-181
0.003
0
7mer
542-568
0.003
Not Conserved
ARL2-SNX15
hsa-miR-657
0.727
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_037650.1
Biotype: sense
Gene id: NR_037650.1 (gene)
Gene Name: ARL2-SNX15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1831-1853
0.010
3
8mer+wobble
947-964
0.004
5
6mer
2262-2285
0.003
1
6mer
1058-1078
0.002
9
6mer
1428-1454
0.002
6
6mer
1179-1199
0.002
6
6mer
976-988
0.001
3
6mer
1565-1592
0.001
1
6mer
1238-1262
0.001
4
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept