LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
AC013269.3
hsa-miR-657
0.736
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000450486
Biotype: antisense
Gene id: ENSG00000225819
Gene Name: AC013269.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5-21
0.023
1
6mer
388-403
0.005
0
AP001471.1
hsa-miR-657
0.736
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000454245
Biotype: antisense
Gene id: ENSG00000227438
Gene Name: AP001471.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Colon Normal/Primary
- Lung Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
450-471
0.013
0
7mer
545-569
0.005
0
6mer
496-513
0.005
0
6mer
640-666
0.003
0
8mer+wobble
411-431
0.002
0
RP5-1136G13.2
hsa-miR-657
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000610085
Biotype: antisense
Gene id: ENSG00000273314
Gene Name: RP5-1136G13.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1674-1694
0.011
7
7mer
471-476
0.007
1
6mer
2072-2091
0.004
3
6mer
350-372
0.002
0
6mer
2054-2075
0.002
2
6mer
1847-1868
0.001
0
AC078842.4
hsa-miR-657
0.736
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000447529
Biotype: lincRNA
Gene id: ENSG00000231114
Gene Name: AC078842.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-209
0.023
1
6mer
1682-1701
0.005
1
NDUFV2-AS1
hsa-miR-657
0.736
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000608008
Biotype: antisense
Gene id: ENSG00000266053
Gene Name: NDUFV2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
27-32
0.024
2
7mer
421-439
0.004
2
AP000439.1
hsa-miR-657
0.735
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000545202
Biotype: lincRNA
Gene id: ENSG00000255980
Gene Name: AP000439.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Liver Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2319-2335
0.010
1
6mer
304-326
0.006
2
6mer
1894-1918
0.005
2
7mer
1229-1249
0.005
1
6mer
885-906
0.002
0
ZNF561-AS1
hsa-miR-657
0.735
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586943
Biotype: retained_intron
Gene id: ENSG00000267106
Gene Name: ZNF561-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
590-606
0.015
0
6mer
452-475
0.012
0
RP11-66A2.2
hsa-miR-657
0.735
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457698
Biotype: lincRNA
Gene id: ENSG00000236497
Gene Name: RP11-66A2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-77
0.017
3
7mer
822-834
0.005
0
6mer
1440-1460
0.003
0
6mer
594-619
0.003
0
XLOC_000303
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001038
Biotype: transcript isomorph
Gene id: XLOC_000303
Gene Name: XLOC_000303
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
197-211
0.007
4
7mer
2390-2406
0.005
1
8mer
472-492
0.005
0
6mer
197-215
0.003
1
6mer
303-322
0.003
2
6mer
985-1006
0.002
1
6mer
500-520
0.002
0
XLOC_008379
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018118
Biotype: transcript isomorph
Gene id: XLOC_008379
Gene Name: XLOC_008379
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
353-371
0.027
1
RP11-317N8.5
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555918
Biotype: antisense
Gene id: ENSG00000258938
Gene Name: RP11-317N8.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-425
0.013
1
7mer
2132-2152
0.007
1
6mer
2309-2330
0.003
3
6mer
1602-1626
0.001
Not Conserved
6mer
1333-1348
0.001
Not Conserved
6mer
1589-1610
0.001
Not Conserved
C20orf203
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000608990
Biotype: lincRNA
Gene id: ENSG00000198547
Gene Name: C20orf203
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
362-389
0.008
5
6mer
453-480
0.005
4
6mer
367-389
0.004
3
6mer
4455-4478
0.003
1
7mer
1118-1138
0.003
2
6mer
3882-3904
0.002
3
6mer
1310-1332
0.002
1
C22orf34
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000343999
Biotype: lincRNA
Gene id: ENSG00000188511
Gene Name: C22orf34
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-309
0.017
0
7mer
2116-2133
0.003
1
6mer
759-773
0.002
0
9mer
1403-1427
0.001
Not Conserved
6mer
1193-1214
0.001
0
6mer
751-773
0.001
0
6mer
1290-1317
0.001
1
6mer
1118-1142
0.001
0
RP11-228B15.4
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000439298
Biotype: antisense
Gene id: ENSG00000225032
Gene Name: RP11-228B15.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1421-1447
0.007
6
7mer
1588-1612
0.006
Not Conserved
6mer
27-31
0.005
2
6mer
506-532
0.004
2
6mer
596-619
0.002
1
6mer
297-322
0.002
0
6mer
929-949
0.001
1
XLOC_004836
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010348
Biotype: transcript isomorph
Gene id: XLOC_004836
Gene Name: XLOC_004836
UCSC graphic: -
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1003-1026
0.017
0
6mer
417-443
0.004
0
6mer
1623-1645
0.004
Not Conserved
6mer
1519-1530
0.003
0
CTC-459F4.3
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2003-2030
0.010
0
6mer
811-835
0.008
0
6mer
1535-1554
0.008
0
6mer
317-343
0.001
Not Conserved
LL22NC03-102D1.18
hsa-miR-657
0.734
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438185
Biotype: lincRNA
Gene id: ENSG00000223999
Gene Name: LL22NC03-102D1.18
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-133
0.022
1
6mer
33-55
0.005
1
XLOC_006294
hsa-miR-657
0.733
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013632
Biotype: transcript isomorph
Gene id: XLOC_006294
Gene Name: XLOC_006294
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1294-1309
0.018
1
7mer
1315-1335
0.006
0
6mer
530-553
0.003
1
ID2-AS1
hsa-miR-657
0.733
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000433340
Biotype: antisense
Gene id: ENSG00000235092
Gene Name: ID2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
390-410
0.018
11
6mer
3-23
0.006
1
6mer
8-30
0.004
1
GMDS-AS1
hsa-miR-657
0.733
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456943
Biotype: lincRNA
Gene id: ENSG00000250903
Gene Name: GMDS-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1783-1799
0.011
0
6mer
1973-1996
0.006
2
7mer
587-611
0.005
1
6mer
378-401
0.002
1
6mer
758-782
0.002
1
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