LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
BCYRN1
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000418539
Biotype: lincRNA
Gene id: ENSG00000236824
Gene Name: BCYRN1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5332-5337
0.004
1
8mer
12020-12038
0.004
0
7mer
6382-6405
0.003
1
6mer
622-647
0.003
1
7mer
4321-4346
0.003
0
6mer
4873-4896
0.002
1
6mer
3528-3554
0.002
1
6mer
11877-11903
0.002
1
6mer
10204-10230
0.001
1
6mer
8494-8520
0.001
1
6mer
702-723
0.001
1
6mer
6855-6881
0.001
0
6mer
5008-5031
0.001
0
6mer
8319-8342
0.001
0
XLOC_010447
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021853
Biotype: transcript isomorph
Gene id: XLOC_010447
Gene Name: XLOC_010447
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-212
0.028
1
AC091729.7
hsa-miR-657
0.739
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449721
Biotype: antisense
Gene id: ENSG00000224079
Gene Name: AC091729.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
189-206
0.022
0
6mer
568-589
0.006
1
CHL1-AS1
hsa-miR-657
0.739
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417612
Biotype: antisense
Gene id: ENSG00000234661
Gene Name: CHL1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
765-781
0.023
2
6mer
756-781
0.005
8
AC008067.2
hsa-miR-657
0.739
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000599412
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-578
0.028
7
RP11-104H15.10
hsa-miR-657
0.739
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575331
Biotype: processed_transcript
Gene id: ENSG00000272884
Gene Name: RP11-104H15.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3879-3894
0.005
1
8mer
4247-4269
0.005
1
6mer
867-883
0.004
8
6mer
421-448
0.003
1
6mer
63-85
0.003
3
6mer
2705-2726
0.002
6
6mer
1880-1901
0.002
2
6mer
1623-1643
0.002
2
6mer
732-737
0.001
Not Conserved
HCG18
hsa-miR-657
0.739
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454269
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-849
0.017
0
6mer
2355-2362
0.005
1
6mer
1915-1934
0.003
1
6mer
1714-1732
0.002
1
AC007879.7
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000430494
Biotype: lincRNA
Gene id: ENSG00000229647
Gene Name: AC007879.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
77-82
0.010
2
7mer
807-833
0.008
1
6mer
875-898
0.006
1
6mer
763-779
0.004
1
XLOC_010198
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020920
Biotype: transcript isomorph
Gene id: XLOC_010198
Gene Name: XLOC_010198
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-71
0.028
1
RP11-402J6.1
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506057
Biotype: antisense
Gene id: ENSG00000249509
Gene Name: RP11-402J6.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
606-629
0.016
1
7mer
572-590
0.012
0
XLOC_013744
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028390
Biotype: transcript isomorph
Gene id: XLOC_013744
Gene Name: XLOC_013744
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
809-831
0.017
1
7mer
370-393
0.011
1
RP11-280H21.1
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000487772
Biotype: lincRNA
Gene id: ENSG00000241754
Gene Name: RP11-280H21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
375-401
0.028
6
RP11-27P7.1
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000531077
Biotype: lincRNA
Gene id: ENSG00000254775
Gene Name: RP11-27P7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
147-167
0.028
1
RP11-121A8.1
hsa-miR-657
0.738
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609522
Biotype: lincRNA
Gene id: ENSG00000272908
Gene Name: RP11-121A8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
409-430
0.028
1
C21orf90
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000354333
Biotype: antisense
Gene id: ENSG00000182912
Gene Name: C21orf90
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2241-2266
0.012
0
6mer
2317-2326
0.008
1
6mer
708-734
0.004
1
6mer
850-871
0.002
0
6mer
246-265
0.002
0
RP11-465L10.10
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000535913
Biotype: antisense
Gene id: ENSG00000204044
Gene Name: RP11-465L10.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1658-1683
0.012
7
8mer
869-885
0.005
4
7mer
1218-1242
0.004
0
6mer
181-201
0.003
1
6mer
1852-1873
0.002
Not Conserved
6mer
733-757
0.002
0
6mer
798-822
0.001
4
XXbac-BPG13B8.10
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436804
Biotype: lincRNA
Gene id: ENSG00000229274
Gene Name: XXbac-BPG13B8.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
292-310
0.014
1
6mer
263-284
0.006
1
6mer
732-758
0.005
0
6mer
483-510
0.003
0
DGCR5
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000438934
Biotype: antisense
Gene id: ENSG00000237517
Gene Name: DGCR5
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5392-5416
0.008
0
6mer
506-532
0.003
0
6mer
5188-5215
0.003
0
6mer
5100-5122
0.003
0
7mer
2495-2515
0.002
0
6mer
4976-5000
0.002
0
6mer
4459-4482
0.002
0
6mer
2236-2260
0.001
0
6mer
3261-3277
0.001
0
6mer
1488-1513
0.001
0
6mer
4021-4040
0.001
0
6mer
1530-1553
0.000
0
LINC00319
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000448049
Biotype: lincRNA
Gene id: ENSG00000188660
Gene Name: LINC00319
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
953-979
0.009
0
7mer
1802-1818
0.005
1
6mer
105-132
0.004
1
6mer
195-216
0.004
1
6mer
82-109
0.003
0
6mer
1052-1079
0.001
1
6mer
1064-1089
0.001
1
6mer
1926-1944
0.001
0
6mer
1827-1849
0.001
1
RP11-754B17.1
hsa-miR-657
0.737
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527799
Biotype: antisense
Gene id: ENSG00000255158
Gene Name: RP11-754B17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
865-885
0.014
1
7mer
266-279
0.008
0
6mer
711-738
0.005
1
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