LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
C12orf80
hsa-miR-657
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000551332
Biotype: lincRNA
Gene id: ENSG00000257137
Gene Name: C12orf80
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
615-638
0.016
8
6mer
287-306
0.007
7
6mer
586-607
0.005
5
RP3-468B3.2
hsa-miR-657
0.744
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000530000
Biotype: lincRNA
Gene id: ENSG00000233183
Gene Name: RP3-468B3.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6226-6250
0.006
1
7mer
448-474
0.005
1
7mer
6162-6188
0.004
1
6mer
3964-3983
0.004
7
6mer
864-891
0.003
2
6mer
526-537
0.002
1
6mer
2907-2932
0.002
2
6mer
3311-3333
0.001
4
6mer
3238-3260
0.001
1
LINC00693
hsa-miR-657
0.744
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000432518
Biotype: antisense
Gene id: ENSG00000228214
Gene Name: LINC00693
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
547-565
0.006
1
7mer
1350-1366
0.006
1
6mer
2100-2108
0.005
1
6mer
277-297
0.005
5
6mer
1419-1423
0.003
1
6mer
317-335
0.003
2
RP11-164J13.1
hsa-miR-657
0.743
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000549793
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2338-2355
0.007
8
6mer
618-642
0.005
6
6mer
2284-2304
0.004
8
7mer
2987-3012
0.003
0
6mer
752-778
0.003
4
6mer
2914-2935
0.002
1
6mer
1765-1791
0.002
6
6mer
1853-1879
0.001
9
XLOC_005174
hsa-miR-657
0.743
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011695
Biotype: transcript isomorph
Gene id: XLOC_005174
Gene Name: XLOC_005174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
421-444
0.018
1
6mer
402-425
0.010
6
CTA-414D7.1
hsa-miR-657
0.743
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623440
Biotype: sense_intronic
Gene id: ENSG00000279175
Gene Name: CTA-414D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
607-629
0.004
1
6mer
278-300
0.004
1
6mer
674-693
0.002
1
6mer
3538-3556
0.002
2
6mer
8120-8143
0.002
0
6mer
7909-7935
0.002
1
6mer
5183-5209
0.001
0
6mer
6418-6438
0.001
1
6mer
2685-2704
0.001
1
6mer
3841-3865
0.001
0
6mer
8756-8782
0.001
0
6mer
3138-3164
0.001
1
6mer
1896-1921
0.001
0
6mer
9849-9875
0.001
0
6mer
1316-1341
0.001
1
6mer
1455-1473
0.001
2
6mer
5321-5344
0.001
0
SLX1B-SULT1A4
hsa-miR-657
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000395400
Biotype: retained_intron
Gene id: ENSG00000260280
Gene Name: SLX1B-SULT1A4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
107-132
0.009
1
7mer
1727-1732
0.007
3
6mer
1506-1528
0.003
2
6mer
2025-2050
0.003
4
7mer
1143-1168
0.003
3
6mer
1072-1076
0.002
0
6mer
625-651
0.002
0
6mer
880-902
0.001
0
RP11-774O3.2
hsa-miR-657
0.742
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509453
Biotype: lincRNA
Gene id: ENSG00000249145
Gene Name: RP11-774O3.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
280-301
0.015
1
6mer
150-177
0.007
1
6mer
118-141
0.006
1
DKFZp434L192
hsa-miR-657
0.742
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000566570
Biotype: lincRNA
Gene id: ENSG00000261275
Gene Name: DKFZp434L192
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3215-3241
0.011
0
6mer
299-326
0.006
1
6mer
122-144
0.004
0
6mer
2734-2760
0.003
1
7mer
336-355
0.003
0
6mer
832-856
0.002
Not Conserved
FRMPD4-AS1
hsa-miR-657
0.742
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000425057
Biotype: antisense
Gene id: ENSG00000223487
Gene Name: FRMPD4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
13-37
0.028
1
RP11-849H4.4
hsa-miR-657
0.742
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000502284
Biotype: antisense
Gene id: ENSG00000251143
Gene Name: RP11-849H4.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
410-437
0.008
5
6mer
360-383
0.006
6
7mer
2452-2461
0.004
0
6mer
2096-2120
0.004
8
6mer
617-644
0.003
1
6mer
3144-3171
0.003
1
6mer
1457-1479
0.001
1
RP4-569M23.5
hsa-miR-657
0.741
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000599904
Biotype: antisense
Gene id: ENSG00000267882
Gene Name: RP4-569M23.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-453
0.021
8
6mer
184-203
0.005
4
6mer
1537-1545
0.002
1
UCA1
hsa-miR-657
0.741
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000589333
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-80
0.028
1
XLOC_002770
hsa-miR-657
0.741
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006165
Biotype: transcript isomorph
Gene id: XLOC_002770
Gene Name: XLOC_002770
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
492-501
0.019
4
7mer
21-44
0.005
0
6mer
86-110
0.003
1
RP11-115D19.1
hsa-miR-657
0.741
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513572
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
208-230
0.028
1
LINC00174
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_026873.1
Biotype: antisense
Gene id: NR_026873.1 (gene)
Gene Name: LINC00174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
740-758
0.003
0
6mer
3695-3715
0.002
Not Conserved
6mer
590-611
0.002
Not Conserved
6mer
379-400
0.002
0
6mer
2527-2552
0.002
0
6mer
2179-2200
0.002
1
6mer
1094-1119
0.001
1
6mer
1885-1906
0.001
0
6mer
543-564
0.001
Not Conserved
6mer
347-367
0.001
0
6mer
3127-3147
0.001
0
6mer
2730-2751
0.001
0
6mer
2431-2448
0.001
1
6mer
1162-1182
0.001
1
6mer
1294-1315
0.001
0
6mer
1384-1405
0.001
0
6mer
995-1016
0.001
0
6mer
2494-2513
0.001
1
6mer
3096-3117
0.001
0
6mer
1262-1283
0.001
0
6mer
991-1016
0.001
0
6mer
3015-3038
0.001
0
6mer
1058-1083
0.000
Not Conserved
6mer
1158-1182
0.000
Not Conserved
AC093901.1
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449819
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-260
0.019
10
6mer
79-104
0.009
10
XLOC_004924
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010403
Biotype: transcript isomorph
Gene id: XLOC_004924
Gene Name: XLOC_004924
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
10612-10634
0.005
4
6mer
440-463
0.004
3
6mer
10528-10535
0.004
6
6mer
9079-9105
0.004
8
6mer
10820-10846
0.003
1
6mer
10736-10758
0.002
1
8mer+mismatch
6735-6759
0.002
0
6mer
7360-7383
0.001
1
6mer
2653-2676
0.001
1
6mer
2423-2442
0.001
1
RP11-699L21.1
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000397645
Biotype: lincRNA
Gene id: ENSG00000214146
Gene Name: RP11-699L21.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1105-1127
0.028
3
LINC00293
hsa-miR-657
0.740
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518278
Biotype: lincRNA
Gene id: ENSG00000253314
Gene Name: LINC00293
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
459-471
0.013
1
6mer
384-410
0.009
0
6mer
410-421
0.006
0
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