LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-94M14.2
hsa-miR-657
0.748
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000422206
Biotype: lincRNA
Gene id: ENSG00000224750
Gene Name: RP11-94M14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2120-2144
0.020
5
6mer
244-266
0.004
1
7mer
1261-1282
0.004
1
LINC00938
hsa-miR-657
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609803
Biotype: lincRNA
Gene id: ENSG00000273015
Gene Name: LINC00938
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
254-276
0.023
1
6mer
9520-9533
0.002
2
6mer
519-546
0.001
0
6mer
2042-2069
0.001
1
RP11-986G18.2
hsa-miR-657
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613818
Biotype: lincRNA
Gene id: ENSG00000274659
Gene Name: RP11-986G18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
270-297
0.018
1
7mer
333-356
0.011
0
RP11-715J22.6
hsa-miR-657
0.748
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-335
0.013
5
8mer
3141-3164
0.003
1
6mer
5034-5058
0.003
3
6mer
4547-4571
0.003
2
6mer
5105-5132
0.002
1
6mer
2777-2789
0.001
0
6mer
3505-3521
0.001
0
6mer
1614-1636
0.001
1
6mer
1333-1350
0.001
1
LINC00942
hsa-miR-657
0.748
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000515614
Biotype: lincRNA
Gene id: ENSG00000249628
Gene Name: LINC00942
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
302-320
0.008
5
7mer
122-142
0.007
1
6mer
2332-2358
0.004
1
7mer
2361-2379
0.004
Not Conserved
6mer
909-936
0.002
2
6mer
1154-1181
0.002
1
6mer
171-190
0.001
0
6mer
1084-1110
0.001
2
LINC01366
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000521471
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
718-734
0.028
2
RP11-164J13.1
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000495723
Biotype: processed_transcript
Gene id: ENSG00000258461
Gene Name: RP11-164J13.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2996-3013
0.007
8
6mer
618-642
0.005
6
6mer
2942-2962
0.004
8
6mer
752-778
0.003
4
6mer
2424-2449
0.003
6
7mer
3645-3670
0.003
0
6mer
3572-3593
0.003
1
6mer
2511-2537
0.001
9
XLOC_007747
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016370
Biotype: transcript isomorph
Gene id: XLOC_007747
Gene Name: XLOC_007747
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-64
0.022
3
6mer
826-849
0.006
3
ITGB5-AS1
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000495917
Biotype: antisense
Gene id: ENSG00000244286
Gene Name: ITGB5-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-336
0.028
2
CASC8
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000502082
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-161
0.010
1
6mer
1393-1416
0.006
3
7mer
1148-1161
0.005
Not Conserved
6mer
1157-1177
0.004
1
6mer
100-121
0.004
1
RP5-1142A6.2
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000440406
Biotype: antisense
Gene id: ENSG00000224888
Gene Name: RP5-1142A6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1514-1537
0.007
1
7mer
902-922
0.005
6
6mer
1073-1091
0.004
4
7mer
1138-1157
0.004
0
6mer
1330-1353
0.004
3
6mer
880-906
0.003
2
6mer
1039-1051
0.002
1
XLOC_002585
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6271-6293
0.009
1
7mer
3384-3408
0.007
2
7mer
26-47
0.006
0
6mer
5464-5487
0.002
Not Conserved
6mer
4070-4096
0.002
3
6mer
1914-1930
0.001
3
6mer
4150-4174
0.001
2
RP11-424D14.1
hsa-miR-657
0.747
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000425517
Biotype: lincRNA
Gene id: ENSG00000223883
Gene Name: RP11-424D14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
234-257
0.015
1
7mer
121-134
0.013
1
XLOC_002067
hsa-miR-657
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004225
Biotype: transcript isomorph
Gene id: XLOC_002067
Gene Name: XLOC_002067
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
104-117
0.021
1
7mer
586-604
0.007
0
XLOC_001979
hsa-miR-657
0.746
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004136
Biotype: transcript isomorph
Gene id: XLOC_001979
Gene Name: XLOC_001979
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
654-675
0.015
1
7mer
387-412
0.008
1
6mer
509-528
0.005
2
RP11-22P6.3
hsa-miR-657
0.746
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561547
Biotype: antisense
Gene id: ENSG00000260442
Gene Name: RP11-22P6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-456
0.028
5
RP11-800A3.4
hsa-miR-657
0.745
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000565433
Biotype: sense_overlapping
Gene id: ENSG00000260401
Gene Name: RP11-800A3.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3272-3298
0.017
1
6mer
680-698
0.004
4
6mer
155-182
0.003
2
6mer
919-932
0.002
2
7mer
1365-1388
0.001
0
6mer
1388-1409
0.001
3
6mer
1370-1392
0.001
3
RP4-639J15.3
hsa-miR-657
0.745
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000594086
Biotype: lincRNA
Gene id: ENSG00000269446
Gene Name: RP4-639J15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
413-438
0.015
1
6mer
639-665
0.009
1
6mer
419-442
0.005
0
RP4-712E4.2
hsa-miR-657
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000449439
Biotype: lincRNA
Gene id: ENSG00000239216
Gene Name: RP4-712E4.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
304-323
0.015
9
6mer
354-377
0.013
9
RP11-450K4.1
hsa-miR-657
0.745
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_045382.1
Biotype: antisense
Gene id: NR_045382.1 (gene)
Gene Name: RP11-450K4.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
584-597
0.028
2
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