LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-657


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
HOXA-AS2
hsa-miR-657
0.753
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000517635
Biotype: antisense
Gene id: ENSG00000253552
Gene Name: HOXA-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
215-236
0.021
6
6mer
2394-2420
0.004
1
6mer
2416-2439
0.002
1
6mer
1396-1418
0.002
0
HAGLR
hsa-miR-657
0.752
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416928
Biotype: antisense
Gene id: ENSG00000224189
Gene Name: HAGLR
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
960-966
0.010
6
7mer
3641-3666
0.010
3
6mer
141-168
0.005
0
6mer
2566-2590
0.002
2
6mer
2776-2782
0.002
1
AC004490.1
hsa-miR-657
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585593
Biotype: antisense
Gene id: ENSG00000267122
Gene Name: AC004490.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2566-2585
0.013
11
6mer
174-194
0.004
1
7mer
1637-1659
0.002
1
6mer
646-667
0.002
0
6mer
2398-2419
0.002
1
7mer
1276-1298
0.002
0
6mer
2125-2147
0.001
0
6mer
2355-2381
0.001
0
6mer
1435-1459
0.001
1
7mer
1630-1641
0.001
0
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-657
0.752
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000584900
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
955-980
0.011
0
6mer
591-617
0.007
6
7mer
1212-1217
0.006
2
7mer
262-281
0.003
1
6mer
343-360
0.002
2
CTD-2561J22.5
hsa-miR-657
0.752
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600469
Biotype: lincRNA
Gene id: ENSG00000268119
Gene Name: CTD-2561J22.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
414-440
0.012
1
6mer
377-399
0.009
1
6mer
164-190
0.007
0
XLOC_005081
hsa-miR-657
0.751
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010554
Biotype: transcript isomorph
Gene id: XLOC_005081
Gene Name: XLOC_005081
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4000-4010
0.024
9
6mer
3929-3945
0.003
6
6mer
3510-3530
0.002
1
PAX8-AS1
hsa-miR-657
0.751
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000616073
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
96-123
0.013
10
8mer
481-504
0.012
3
7mer
91-96
0.004
1
RP11-455O6.2
hsa-miR-657
0.751
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000571085
Biotype: antisense
Gene id: ENSG00000262115
Gene Name: RP11-455O6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
486-508
0.024
2
6mer
333-356
0.005
2
LARGE-AS1
hsa-miR-657
0.751
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000453336
Biotype: antisense
Gene id: ENSG00000224973
Gene Name: LARGE-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1522-1543
0.025
5
6mer
1633-1659
0.004
1
LINC01136
hsa-miR-657
0.751
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000457348
Biotype: lincRNA
Gene id: ENSG00000233791
Gene Name: LINC01136
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-91
0.014
3
7mer
1596-1615
0.009
1
6mer
2015-2038
0.003
1
6mer
925-948
0.002
0
6mer
1212-1238
0.002
Not Conserved
TPT1-AS1
hsa-miR-657
0.750
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000517509
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
333-355
0.005
0
6mer
155-177
0.004
0
6mer
483-510
0.003
0
6mer
625-652
0.003
0
6mer
2962-2983
0.003
3
7mer
415-431
0.002
0
7mer
546-573
0.002
0
6mer
842-869
0.002
0
7mer
687-714
0.002
Not Conserved
7mer
774-790
0.002
0
7mer
919-935
0.001
Not Conserved
C6orf164
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_026784.1
Biotype: sense
Gene id: NR_026784.1 (gene)
Gene Name: C6orf164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
642-663
0.020
1
6mer
1103-1108
0.005
1
6mer
1116-1138
0.003
1
XLOC_009651
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021052
Biotype: transcript isomorph
Gene id: XLOC_009651
Gene Name: XLOC_009651
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
441-455
0.021
1
6mer
373-391
0.008
0
RP11-115D19.1
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507916
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-191
0.029
1
NDUFA6-AS1
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000439129
Biotype: antisense
Gene id: ENSG00000237037
Gene Name: NDUFA6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
2131-2155
0.008
0
9mer
1082-1106
0.006
0
6mer
2469-2490
0.004
3
6mer
614-640
0.003
0
6mer
2844-2865
0.002
1
6mer
1420-1441
0.002
2
6mer
2168-2188
0.002
0
6mer
1119-1139
0.001
0
XLOC_006123
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013475
Biotype: transcript isomorph
Gene id: XLOC_006123
Gene Name: XLOC_006123
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
341-363
0.008
0
6mer
628-651
0.005
0
6mer
718-733
0.004
0
6mer
1923-1944
0.004
Not Conserved
6mer
770-792
0.003
0
8mer
1752-1764
0.003
Not Conserved
6mer
1702-1729
0.002
Not Conserved
RP11-953B20.1
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000562989
Biotype: lincRNA
Gene id: ENSG00000261710
Gene Name: RP11-953B20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
55-77
0.011
1
6mer
1568-1593
0.009
1
7mer
1674-1700
0.009
0
LINC00950
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_024006.1
Biotype: lincRNA
Gene id: NR_024006.1 (gene)
Gene Name: LINC00950
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4697-4721
0.008
8
6mer
4651-4670
0.005
5
7mer
4631-4655
0.003
0
6mer
4611-4635
0.002
1
6mer
834-848
0.002
0
7mer
3527-3548
0.002
1
6mer
4790-4814
0.002
1
6mer
1128-1149
0.002
1
6mer
2267-2284
0.001
1
6mer
3020-3040
0.001
0
6mer
1897-1917
0.001
2
6mer
2295-2317
0.001
1
RP11-488P3.1
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000433544
Biotype: sense_intronic
Gene id: ENSG00000230439
Gene Name: RP11-488P3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1437-1450
0.011
2
7mer
1047-1061
0.006
2
6mer
277-282
0.005
2
6mer
693-703
0.005
4
TPT1-AS1
hsa-miR-657
0.749
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000522673
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
32-59
0.006
0
6mer
111-138
0.005
0
6mer
328-355
0.004
0
7mer
173-200
0.004
Not Conserved
6mer
473-500
0.004
0
7mer
260-276
0.003
0
7mer
405-421
0.002
Not Conserved
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept