LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
LINC01366
hsa-miR-657
0.759
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518357
Biotype: lincRNA
Gene id: ENSG00000235172
Gene Name: LINC01366
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
646-662
0.029
2
CTD-2516F10.2
hsa-miR-657
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526706
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
112-134
0.025
2
6mer
379-400
0.004
1
RP4-671O14.6
hsa-miR-657
0.759
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624919
Biotype: sense_overlapping
Gene id: ENSG00000280434
Gene Name: RP4-671O14.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
14192-14213
0.007
0
7mer
1682-1704
0.003
1
8mer
4695-4714
0.003
0
6mer
210-237
0.002
0
6mer
3809-3831
0.002
1
6mer
12873-12899
0.002
0
6mer
5752-5778
0.001
2
6mer
3964-3989
0.001
1
6mer
13011-13032
0.001
1
6mer
3604-3623
0.001
0
6mer
6290-6311
0.001
1
6mer
10052-10077
0.001
2
6mer
1257-1280
0.001
1
6mer
8756-8772
0.001
4
6mer
3229-3248
0.001
1
6mer
4444-4464
0.001
0
6mer
4052-4076
0.001
0
6mer
5774-5796
0.001
1
XLOC_004823
hsa-miR-657
0.759
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010335
Biotype: transcript isomorph
Gene id: XLOC_004823
Gene Name: XLOC_004823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
401-419
0.010
1
7mer
328-334
0.010
0
6mer
138-164
0.005
4
6mer
648-674
0.004
1
LINC00540
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000616974
Biotype: lincRNA
Gene id: ENSG00000276476
Gene Name: LINC00540
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
37-55
0.022
1
7mer
759-784
0.004
1
6mer
6-30
0.003
2
ABHD14A-ACY1
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_037192.1
Biotype: sense
Gene id: NR_037192.1 (gene)
Gene Name: ABHD14A-ACY1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1307-1325
0.008
3
6mer
1716-1738
0.007
8
6mer
561-585
0.005
7
6mer
1704-1715
0.004
4
6mer
1711-1733
0.004
5
6mer
276-293
0.002
Not Conserved
XLOC_010491
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021594
Biotype: transcript isomorph
Gene id: XLOC_010491
Gene Name: XLOC_010491
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
211-223
0.023
1
6mer
142-158
0.004
0
6mer
178-200
0.003
0
XLOC_013265
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027227
Biotype: transcript isomorph
Gene id: XLOC_013265
Gene Name: XLOC_013265
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
973-984
0.015
0
6mer
126-146
0.014
0
RP11-485O10.3
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000623211
Biotype: TEC
Gene id: ENSG00000259700
Gene Name: RP11-485O10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1002-1025
0.028
1
6mer
487-512
0.002
Not Conserved
KIAA1875
hsa-miR-657
0.758
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_024207.1
Biotype: sense
Gene id: NR_024207.1 (gene)
Gene Name: KIAA1875
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
6033-6060
0.005
1
7mer
2284-2309
0.004
4
6mer
398-424
0.003
2
6mer
6744-6765
0.003
1
6mer
144-170
0.003
1
6mer
6644-6667
0.002
1
7mer
1707-1733
0.002
3
7mer
3199-3226
0.002
0
6mer
608-635
0.001
4
6mer
3289-3314
0.001
7
6mer
1453-1478
0.001
3
6mer
602-628
0.001
1
6mer
4426-4447
0.001
0
RP11-615I2.2
hsa-miR-657
0.757
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562172
Biotype: antisense
Gene id: ENSG00000260577
Gene Name: RP11-615I2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1617-1641
0.020
10
7mer
1386-1403
0.009
4
RP11-208N14.4
hsa-miR-657
0.756
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000356133
Biotype: antisense
Gene id: ENSG00000198491
Gene Name: RP11-208N14.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
695-716
0.019
9
8mer
1438-1456
0.011
7
CTD-2516F10.2
hsa-miR-657
0.756
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000504206
Biotype: antisense
Gene id: ENSG00000251364
Gene Name: CTD-2516F10.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4177-4199
0.022
2
6mer
4031-4053
0.003
0
6mer
791-816
0.003
1
6mer
1038-1064
0.002
1
RP11-757G1.6
hsa-miR-657
0.756
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000512200
Biotype: lincRNA
Gene id: ENSG00000250508
Gene Name: RP11-757G1.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
149-164
0.015
0
7mer
1632-1653
0.015
0
C1orf180
hsa-miR-657
0.756
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000370624
Biotype: lincRNA
Gene id: ENSG00000180869
Gene Name: C1orf180
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2765-2785
0.018
2
6mer
2403-2417
0.005
1
6mer
2017-2034
0.005
2
7mer
1605-1626
0.001
Not Conserved
RP11-540A21.2
hsa-miR-657
0.755
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500698
Biotype: lincRNA
Gene id: ENSG00000245522
Gene Name: RP11-540A21.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2153-2159
0.015
0
7mer
1996-2009
0.007
0
7mer
2113-2133
0.006
1
RP11-378I6.1
hsa-miR-657
0.755
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000568063
Biotype: lincRNA
Gene id: ENSG00000261402
Gene Name: RP11-378I6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-170
0.015
9
7mer
599-619
0.010
4
6mer
2839-2847
0.002
0
6mer
1200-1225
0.002
0
AC093901.1
hsa-miR-657
0.754
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414886
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
554-580
0.023
10
6mer
399-424
0.006
10
RP11-666F17.1
hsa-miR-657
0.753
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000414098
Biotype: antisense
Gene id: ENSG00000234428
Gene Name: RP11-666F17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
795-800
0.024
1
6mer
553-571
0.005
Not Conserved
AC079790.2
hsa-miR-657
0.753
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000420365
Biotype: antisense
Gene id: ENSG00000225214
Gene Name: AC079790.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-58
0.029
8
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