LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-657


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-375O18.2
hsa-miR-657
0.769
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000424980
Biotype: lincRNA
Gene id: ENSG00000233086
Gene Name: RP11-375O18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-64
0.030
3
XLOC_011623
hsa-miR-657
0.767
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024244
Biotype: transcript isomorph
Gene id: XLOC_011623
Gene Name: XLOC_011623
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.013
1
6mer
1574-1599
0.008
4
7mer
1529-1551
0.006
Not Conserved
6mer
1657-1683
0.004
0
CH17-264L24.1
hsa-miR-657
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624350
Biotype: lincRNA
Gene id: ENSG00000279278
Gene Name: CH17-264L24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7710-7715
0.010
0
7mer
1250-1269
0.007
0
6mer
2538-2558
0.003
1
6mer
1027-1049
0.002
0
6mer
5611-5628
0.001
0
6mer
3113-3137
0.001
0
6mer
1855-1876
0.001
0
6mer
5062-5078
0.001
0
6mer
5726-5750
0.001
0
6mer
1973-1996
0.001
0
6mer
4047-4073
0.001
0
RP11-475O6.1
hsa-miR-657
0.766
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000413975
Biotype: lincRNA
Gene id: ENSG00000233008
Gene Name: RP11-475O6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
299-317
0.024
1
6mer
135-157
0.006
1
HCG18
hsa-miR-657
0.766
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454129
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-849
0.017
0
6mer
4368-4375
0.005
1
6mer
3786-3805
0.003
1
6mer
3585-3603
0.002
1
6mer
1920-1940
0.002
0
6mer
3146-3167
0.001
1
FOXD2-AS1
hsa-miR-657
0.765
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000445551
Biotype: antisense
Gene id: ENSG00000237424
Gene Name: FOXD2-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
129-140
0.007
4
6mer
230-245
0.007
3
7mer
136-157
0.006
0
6mer
54-73
0.004
1
7mer
1605-1628
0.003
1
7mer
926-949
0.003
1
AC104654.2
hsa-miR-657
0.765
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000436551
Biotype: lincRNA
Gene id: ENSG00000234362
Gene Name: AC104654.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
636-662
0.015
Not Conserved
6mer
216-242
0.015
8
XLOC_003038
hsa-miR-657
0.765
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006435
Biotype: transcript isomorph
Gene id: XLOC_003038
Gene Name: XLOC_003038
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
91-103
0.017
0
6mer
87-103
0.013
0
RP11-854K16.3
hsa-miR-657
0.765
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000568414
Biotype: lincRNA
Gene id: ENSG00000260986
Gene Name: RP11-854K16.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
316-338
0.016
0
6mer
200-219
0.014
0
LINC01125
hsa-miR-657
0.764
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000605017
Biotype: antisense
Gene id: ENSG00000228486
Gene Name: LINC01125
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
208-231
0.015
1
6mer
63-89
0.008
0
6mer
400-423
0.007
0
RP11-573D15.8
hsa-miR-657
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596329
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-66
0.019
9
6mer
414-435
0.004
0
6mer
741-759
0.004
0
6mer
163-189
0.004
0
RP11-1020A11.2
hsa-miR-657
0.763
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602436
Biotype: antisense
Gene id: ENSG00000269982
Gene Name: RP11-1020A11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
217-240
0.006
1
7mer
684-694
0.005
0
6mer
189-193
0.005
1
6mer
391-417
0.004
1
6mer
3034-3060
0.002
1
6mer
529-550
0.002
1
6mer
1312-1338
0.002
2
6mer
2238-2259
0.002
0
6mer
1496-1522
0.001
Not Conserved
FLJ34503
hsa-miR-657
0.762
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000314481
Biotype: antisense
Gene id: ENSG00000175967
Gene Name: FLJ34503
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
225-247
0.022
0
6mer
394-416
0.004
4
6mer
426-451
0.004
3
CTD-2246P4.1
hsa-miR-657
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000585863
Biotype: lincRNA
Gene id: ENSG00000267065
Gene Name: CTD-2246P4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
348-370
0.005
1
6mer
139-160
0.005
0
7mer
700-721
0.004
0
6mer
2164-2186
0.003
0
6mer
449-472
0.003
1
6mer
1415-1438
0.003
1
6mer
562-588
0.003
1
7mer
1448-1475
0.002
0
6mer
1551-1574
0.002
0
RP11-115D19.1
hsa-miR-657
0.761
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508021
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
361-383
0.030
1
RP11-744K17.2
hsa-miR-657
0.761
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582527
Biotype: lincRNA
Gene id: ENSG00000266885
Gene Name: RP11-744K17.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3224-3250
0.016
0
6mer
1219-1244
0.006
1
6mer
466-488
0.005
0
6mer
2450-2461
0.003
0
GS1-124K5.11
hsa-miR-657
0.761
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000449307
Biotype: lincRNA
Gene id: ENSG00000229180
Gene Name: GS1-124K5.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
543-565
0.005
1
8mer
5965-5975
0.005
0
6mer
7057-7084
0.004
1
6mer
2876-2880
0.003
1
6mer
6387-6413
0.002
1
6mer
4780-4806
0.002
1
6mer
2509-2535
0.002
0
6mer
5747-5770
0.002
0
6mer
3111-3131
0.002
0
6mer
4938-4961
0.001
0
6mer
1962-1986
0.001
0
6mer
3281-3304
0.001
0
6mer
1958-1982
0.000
0
XLOC_011507
hsa-miR-657
0.760
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023702
Biotype: transcript isomorph
Gene id: XLOC_011507
Gene Name: XLOC_011507
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-252
0.013
0
7mer
720-743
0.010
2
7mer
334-356
0.007
1
CTC-273B12.8
hsa-miR-657
0.760
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599877
Biotype: lincRNA
Gene id: ENSG00000269751
Gene Name: CTC-273B12.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer+wobble
157-178
0.009
1
7mer
2271-2297
0.006
1
6mer
2105-2128
0.006
1
6mer
1754-1780
0.003
0
7mer
597-616
0.002
0
6mer
977-998
0.002
1
6mer
501-523
0.002
0
RP11-49K4.2
hsa-miR-657
0.759
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000543403
Biotype: lincRNA
Gene id: ENSG00000256684
Gene Name: RP11-49K4.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
241-264
0.029
5
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept