LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-135A1.3
hsa-miR-657
0.773
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000457815
Biotype: lincRNA
Gene id: ENSG00000229964
Gene Name: RP11-135A1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
133-153
0.031
2
RP11-260M19.2
hsa-miR-657
0.773
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555282
Biotype: lincRNA
Gene id: ENSG00000258913
Gene Name: RP11-260M19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
604-627
0.017
3
7mer
467-488
0.011
1
6mer
499-515
0.003
0
XLOC_005862
hsa-miR-657
0.773
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011141
Biotype: transcript isomorph
Gene id: XLOC_005862
Gene Name: XLOC_005862
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2492-2504
0.028
5
6mer
1483-1505
0.003
1
RP11-474D1.3
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000291374
Biotype: lincRNA
Gene id: ENSG00000214039
Gene Name: RP11-474D1.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
734-753
0.017
0
7mer
3429-3438
0.006
1
6mer
3030-3056
0.005
1
7mer
2897-2921
0.003
0
LINC01014
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436432
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
428-446
0.012
0
6mer
483-503
0.007
2
6mer
349-372
0.004
1
6mer
300-326
0.004
1
6mer
294-304
0.004
1
NCOA7-AS1
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000429007
Biotype: antisense
Gene id: ENSG00000232131
Gene Name: NCOA7-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
324-349
0.031
5
TCL6
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000486671
Biotype: retained_intron
Gene id: ENSG00000187621
Gene Name: TCL6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2324-2345
0.012
7
6mer
2239-2264
0.007
0
6mer
2134-2157
0.004
2
6mer
2010-2014
0.004
2
6mer
324-345
0.004
1
RP5-1014D13.2
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623726
Biotype: sense_overlapping
Gene id: ENSG00000279738
Gene Name: RP5-1014D13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6310-6333
0.004
0
6mer
1679-1700
0.003
8
6mer
1234-1260
0.002
1
7mer
16435-16457
0.002
0
6mer
18210-18236
0.002
1
6mer
12817-12840
0.002
1
6mer
17360-17382
0.002
4
6mer
2884-2910
0.002
0
6mer
8551-8573
0.001
1
6mer
13526-13552
0.001
0
6mer
4053-4079
0.001
0
6mer
14875-14901
0.001
0
6mer
14433-14459
0.001
0
6mer
2404-2430
0.001
Not Conserved
6mer
5349-5375
0.001
0
6mer
18348-18371
0.001
1
6mer
12990-13005
0.001
Not Conserved
6mer
15060-15083
0.001
1
6mer
18254-18273
0.001
1
6mer
14571-14594
0.001
0
6mer
14919-14946
0.001
0
6mer
12990-13016
0.000
0
RP11-379F4.4
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000496842
Biotype: antisense
Gene id: ENSG00000240207
Gene Name: RP11-379F4.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
479-485
0.031
1
RP11-436I24.1
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_110149.1
Biotype: antisense
Gene id: NR_110149.1 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-244
0.031
0
TPT1-AS1
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000520585
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-89
0.006
0
6mer
530-557
0.006
0
6mer
141-168
0.005
0
6mer
385-412
0.004
0
7mer
203-230
0.004
Not Conserved
7mer
317-333
0.003
0
7mer
462-478
0.003
Not Conserved
RP11-344E13.3
hsa-miR-657
0.772
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000437829
Biotype: antisense
Gene id: ENSG00000233098
Gene Name: RP11-344E13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-336
0.017
0
6mer
760-778
0.004
0
8mer
284-304
0.004
0
6mer
760-785
0.003
0
6mer
401-412
0.003
0
XLOC_011378
hsa-miR-657
0.771
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023545
Biotype: transcript isomorph
Gene id: XLOC_011378
Gene Name: XLOC_011378
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-237
0.031
1
XLOC_003444
hsa-miR-657
0.770
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007469
Biotype: transcript isomorph
Gene id: XLOC_003444
Gene Name: XLOC_003444
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Skeletal Muscle Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
296-317
0.013
1
6mer
166-193
0.007
1
6mer
134-157
0.006
1
6mer
517-543
0.005
0
ERVH48-1
hsa-miR-657
0.770
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000447535
Biotype: lincRNA
Gene id: ENSG00000233056
Gene Name: ERVH48-1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
83-108
0.016
0
6mer
970-978
0.009
0
7mer
2631-2653
0.005
Not Conserved
RP4-625H18.2
hsa-miR-657
0.770
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447250
Biotype: lincRNA
Gene id: ENSG00000228412
Gene Name: RP4-625H18.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
803-822
0.015
9
6mer
982-1007
0.010
5
6mer
785-806
0.005
6
RP11-263K19.4
hsa-miR-657
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000430312
Biotype: antisense
Gene id: ENSG00000231064
Gene Name: RP11-263K19.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
62-88
0.014
Not Conserved
6mer
518-540
0.011
11
6mer
814-841
0.005
1
LOC100133331
hsa-miR-657
0.770
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_028327.1
Biotype: lincRNA
Gene id: NR_028327.1 (gene)
Gene Name: LOC100133331
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3849-3870
0.004
0
6mer
436-458
0.003
0
6mer
329-351
0.002
Not Conserved
6mer
3593-3604
0.002
Not Conserved
6mer
571-595
0.002
Not Conserved
6mer
293-318
0.001
Not Conserved
6mer
963-982
0.001
Not Conserved
6mer
297-318
0.001
Not Conserved
6mer
2944-2965
0.001
Not Conserved
6mer
3271-3292
0.001
Not Conserved
6mer
1432-1453
0.001
Not Conserved
6mer
3497-3518
0.001
Not Conserved
6mer
2219-2246
0.001
Not Conserved
6mer
2445-2467
0.001
0
6mer
2694-2712
0.001
Not Conserved
6mer
2546-2569
0.001
0
6mer
2088-2109
0.001
0
6mer
2659-2683
0.001
0
6mer
2849-2871
0.001
Not Conserved
6mer
1924-1943
0.000
Not Conserved
6mer
1964-1990
0.000
Not Conserved
6mer
2940-2965
0.000
Not Conserved
6mer
1728-1749
0.000
Not Conserved
6mer
1857-1882
0.000
Not Conserved
6mer
1625-1649
0.000
Not Conserved
6mer
2409-2434
0.000
Not Conserved
6mer
1724-1749
0.000
Not Conserved
CTD-2050N2.1
hsa-miR-657
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000560180
Biotype: antisense
Gene id: ENSG00000259221
Gene Name: CTD-2050N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
111-138
0.022
0
6mer
445-472
0.004
2
6mer
726-740
0.004
1
CTD-2050N2.1
hsa-miR-657
0.769
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000557882
Biotype: antisense
Gene id: ENSG00000259221
Gene Name: CTD-2050N2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
116-143
0.022
0
6mer
286-313
0.005
2
6mer
567-581
0.004
1
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