Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657

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Filters

Gene
miRNA
Score
AC006116.21
hsa-miR-657
0.988

Gene Details
Chromosome: 19
Transcript: ENST00000591036
Biotype: lincRNA
Gene id: ENSG00000267606
Gene Name: AC006116.21
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-211
0.075
1
6mer
265-288
0.007
0
XLOC_011157
hsa-miR-657
0.986

Gene Details
Chromosome: chr15
Transcript: TCONS_00023287
Biotype: transcript isomorph
Gene id: XLOC_011157
Gene Name: XLOC_011157
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
490-510
0.006
0
6mer
2744-2765
0.005
0
7mer
2653-2680
0.005
Not Conserved
7mer
539-559
0.004
0
6mer
529-543
0.004
0
6mer
645-672
0.003
0
6mer
1411-1433
0.003
0
6mer
817-843
0.003
0
6mer
907-928
0.003
0
6mer
844-865
0.003
0
7mer
1109-1130
0.002
0
6mer
737-764
0.002
0
7mer
967-987
0.002
0
6mer
701-723
0.002
0
6mer
1731-1756
0.002
0
6mer
994-1015
0.002
0
6mer
1051-1072
0.002
0
7mer
2510-2536
0.002
Not Conserved
6mer
1909-1930
0.002
0
6mer
2178-2194
0.002
Not Conserved
9mer
656-683
0.002
Not Conserved
6mer
2723-2748
0.002
Not Conserved
6mer
1039-1055
0.002
0
6mer
1804-1827
0.002
0
6mer
2440-2462
0.001
Not Conserved
6mer
2572-2595
0.001
Not Conserved
6mer
1559-1580
0.001
0
6mer
2299-2314
0.001
Not Conserved
6mer
2596-2623
0.001
Not Conserved
6mer
1490-1510
0.001
0
6mer
2241-2267
0.001
Not Conserved
6mer
2619-2640
0.001
Not Conserved
6mer
2411-2433
0.001
Not Conserved
6mer
2636-2657
0.001
Not Conserved
6mer
1490-1515
0.001
0
6mer
1613-1635
0.001
0
6mer
2217-2240
0.001
Not Conserved
6mer
2190-2211
0.001
Not Conserved
6mer
2236-2262
0.001
Not Conserved
6mer
1737-1761
0.001
Not Conserved
6mer
1752-1766
0.000
Not Conserved
XLOC_010812
hsa-miR-657
0.984

Gene Details
Chromosome: chr14
Transcript: TCONS_00022486
Biotype: transcript isomorph
Gene id: XLOC_010812
Gene Name: XLOC_010812
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-351
0.078
1
RP1-309I22.2
hsa-miR-657
0.983

Gene Details
Chromosome: 22
Transcript: ENST00000624184
Biotype: sense_overlapping
Gene id: ENSG00000279338
Gene Name: RP1-309I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10495-10518
0.016
5
7mer
3533-3539
0.008
5
9mer
13506-13531
0.005
0
7mer
22482-22496
0.004
7
6mer
28604-28609
0.004
3
9mer
14504-14530
0.004
1
6mer
206-224
0.004
2
6mer
20622-20649
0.003
8
6mer
28622-28637
0.003
Not Conserved
7mer
25673-25694
0.003
0
6mer
15045-15049
0.002
3
6mer
26506-26524
0.002
5
6mer
16008-16027
0.002
1
6mer
23419-23445
0.002
3
8mer
4500-4520
0.002
0
6mer
18779-18797
0.002
0
7mer
3311-3338
0.002
1
6mer
7237-7262
0.001
1
6mer
16477-16502
0.001
Not Conserved
6mer
8582-8605
0.001
0
6mer
2158-2182
0.001
1
6mer
11235-11254
0.001
1
6mer
22200-22219
0.001
1
6mer
8249-8272
0.001
1
6mer
24015-24038
0.001
0
6mer
23471-23498
0.001
4
6mer
24017-24042
0.000
0
LINC01224
hsa-miR-657
0.983

Gene Details
Chromosome: 19
Transcript: ENST00000596763
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
141-152
0.054
1
6mer
307-329
0.013
1
6mer
223-245
0.010
1
XLOC_006349
hsa-miR-657
0.982

Gene Details
Chromosome: chr7
Transcript: TCONS_00013687
Biotype: transcript isomorph
Gene id: XLOC_006349
Gene Name: XLOC_006349
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
269-274
0.047
0
7mer
525-541
0.029
0
XLOC_012981
hsa-miR-657
0.982

Gene Details
Chromosome: chr19
Transcript: TCONS_00027489
Biotype: transcript isomorph
Gene id: XLOC_012981
Gene Name: XLOC_012981
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2391-2401
0.016
1
6mer
2536-2555
0.014
1
6mer
2551-2560
0.012
1
7mer
1527-1553
0.011
1
6mer
314-339
0.006
0
6mer
555-578
0.006
0
6mer
2463-2486
0.006
0
6mer
615-630
0.004
0
XLOC_013708
hsa-miR-657
0.981

Gene Details
Chromosome: chr20
Transcript: TCONS_00028355
Biotype: transcript isomorph
Gene id: XLOC_013708
Gene Name: XLOC_013708
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1640-1650
0.032
0
6mer
35-53
0.020
0
6mer
332-351
0.012
0
6mer
1252-1279
0.011
0
TTTY15
hsa-miR-657
0.980

Gene Details
Chromosome: Y
Transcript: ENST00000417071
Biotype: lincRNA
Gene id: ENSG00000233864
Gene Name: TTTY15
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
306-333
0.043
0
6mer
681-704
0.018
0
6mer
704-726
0.014
0
PCAT19
hsa-miR-657
0.980

Gene Details
Chromosome: 19
Transcript: ENST00000588495
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
279-295
0.023
1
6mer
56-83
0.022
1
6mer
739-760
0.013
1
6mer
1341-1355
0.008
1
6mer
1569-1581
0.006
1
6mer
390-394
0.003
Not Conserved
XLOC_006242
hsa-miR-657
0.977

Gene Details
Chromosome: chr7
Transcript: TCONS_00014209
Biotype: transcript isomorph
Gene id: XLOC_006242
Gene Name: XLOC_006242
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2083-2109
0.024
1
6mer
302-325
0.013
1
6mer
2105-2131
0.013
1
7mer
675-697
0.010
0
6mer
1775-1801
0.007
1
6mer
1531-1554
0.004
0
7mer
1774-1779
0.002
Not Conserved
XLOC_012034
hsa-miR-657
0.975

Gene Details
Chromosome: chr16
Transcript: TCONS_00024749
Biotype: transcript isomorph
Gene id: XLOC_012034
Gene Name: XLOC_012034
UCSC graphic: -
Expression:
  Cell Line Tissue Category
Fibroblasts Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
106-125
0.034
1
8mer
602-621
0.030
1
6mer
681-697
0.007
2
UCA1
hsa-miR-657
0.974

Gene Details
Chromosome: 19
Transcript: ENST00000397381
Biotype: lincRNA
Gene id: ENSG00000214049
Gene Name: UCA1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
843-869
0.017
1
6mer
1707-1717
0.017
1
6mer
1852-1871
0.013
1
6mer
1867-1876
0.011
1
6mer
300-325
0.006
0
6mer
1779-1802
0.005
0
XLOC_003440
hsa-miR-657
0.973

Gene Details
Chromosome: chr4
Transcript: TCONS_00007971
Biotype: transcript isomorph
Gene id: XLOC_003440
Gene Name: XLOC_003440
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3092-3115
0.014
1
6mer
2955-2981
0.010
1
7mer
2616-2639
0.007
1
6mer
2401-2419
0.006
2
7mer
743-764
0.005
0
6mer
1737-1760
0.005
2
6mer
2698-2714
0.005
1
6mer
2450-2467
0.004
1
6mer
3183-3209
0.004
Not Conserved
6mer
515-540
0.003
0
6mer
2698-2718
0.003
1
6mer
2025-2045
0.002
0
LINC00499
hsa-miR-657
0.972

Gene Details
Chromosome: 4
Transcript: ENST00000502757
Biotype: lincRNA
Gene id: ENSG00000251372
Gene Name: LINC00499
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
271-293
0.069
0
XLOC_000361
hsa-miR-657
0.972

Gene Details
Chromosome: chr1
Transcript: TCONS_00001115
Biotype: transcript isomorph
Gene id: XLOC_000361
Gene Name: XLOC_000361
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-207
0.069
1
XLOC_013010
hsa-miR-657
0.972

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1399-1409
0.022
0
6mer
1485-1507
0.019
0
6mer
362-388
0.016
0
6mer
641-667
0.012
0
XLOC_013274
hsa-miR-657
0.970

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
6388-6415
0.012
0
7mer
242-260
0.011
0
6mer
5458-5483
0.008
1
6mer
1548-1569
0.007
1
6mer
2868-2883
0.006
1
6mer
3827-3853
0.005
1
6mer
5307-5334
0.005
1
6mer
5024-5046
0.004
1
6mer
2793-2812
0.004
1
6mer
5961-5979
0.003
0
6mer
2593-2608
0.002
0
6mer
2732-2754
0.001
0
RP11-13K12.1
hsa-miR-657
0.970

Gene Details
Chromosome: 17
Transcript: ENST00000590398
Biotype: lincRNA
Gene id: ENSG00000267506
Gene Name: RP11-13K12.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2031-2043
0.006
0
7mer
630-655
0.004
0
7mer
418-443
0.004
0
7mer
1849-1874
0.003
Not Conserved
7mer
1899-1924
0.003
0
7mer
471-496
0.003
0
7mer
948-973
0.003
0
7mer
524-549
0.003
0
7mer
577-602
0.003
0
7mer
1319-1344
0.002
0
7mer
1743-1768
0.002
0
7mer
1955-1980
0.002
Not Conserved
7mer
683-708
0.002
0
7mer
736-761
0.002
0
7mer
789-814
0.002
0
7mer
1793-1818
0.002
0
7mer
842-867
0.002
0
7mer
895-920
0.002
0
7mer
1478-1503
0.002
0
7mer
1637-1662
0.002
Not Conserved
7mer
1690-1715
0.002
Not Conserved
7mer
1001-1026
0.002
0
7mer
1584-1609
0.001
0
7mer
1531-1556
0.001
Not Conserved
7mer
1372-1397
0.001
0
7mer
1425-1450
0.001
0
7mer
1107-1132
0.001
0
7mer
1213-1238
0.001
0
7mer
1160-1185
0.001
0
7mer
1054-1079
0.001
Not Conserved
6mer
1266-1291
0.001
Not Conserved
XLOC_008878
hsa-miR-657
0.969

Gene Details
Chromosome: chr10
Transcript: TCONS_00017740
Biotype: transcript isomorph
Gene id: XLOC_008878
Gene Name: XLOC_008878
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-661
0.024
0
6mer
1817-1837
0.016
0
6mer
203-228
0.015
0
6mer
1691-1711
0.012
0
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