LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-182L21.6
hsa-miR-657
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000605920
Biotype: lincRNA
Gene id: ENSG00000272447
Gene Name: RP11-182L21.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1540-1561
0.017
0
6mer
753-778
0.011
0
6mer
59-85
0.002
Not Conserved
6mer
33-54
0.001
Not Conserved
RP11-441O15.3
hsa-miR-657
0.779
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000416191
Biotype: lincRNA
Gene id: ENSG00000224934
Gene Name: RP11-441O15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
446-471
0.015
1
6mer
2123-2145
0.004
1
6mer
2574-2600
0.004
1
6mer
219-246
0.004
1
6mer
8-32
0.003
0
6mer
2610-2637
0.002
0
AC006946.15
hsa-miR-657
0.778
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428078
Biotype: lincRNA
Gene id: ENSG00000235478
Gene Name: AC006946.15
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
558-581
0.022
0
7mer
399-424
0.009
1
XLOC_001920
hsa-miR-657
0.778
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004071
Biotype: transcript isomorph
Gene id: XLOC_001920
Gene Name: XLOC_001920
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1210-1230
0.018
0
6mer
669-696
0.008
0
6mer
228-251
0.002
Not Conserved
6mer
1312-1337
0.002
Not Conserved
6mer
1333-1355
0.002
Not Conserved
RP11-22P6.3
hsa-miR-657
0.778
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000566956
Biotype: antisense
Gene id: ENSG00000260442
Gene Name: RP11-22P6.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
379-403
0.031
5
HCG18
hsa-miR-657
0.777
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000449544
Biotype: antisense
Gene id: ENSG00000231074
Gene Name: HCG18
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
827-849
0.016
0
6mer
4226-4233
0.006
1
6mer
3786-3805
0.004
1
6mer
3585-3603
0.003
1
6mer
1920-1940
0.002
0
6mer
3146-3167
0.001
1
CTB-31O20.4
hsa-miR-657
0.777
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000590823
Biotype: retained_intron
Gene id: ENSG00000267244
Gene Name: CTB-31O20.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
782-799
0.020
1
7mer
816-842
0.003
1
6mer
2197-2215
0.002
0
6mer
1065-1084
0.002
1
6mer
1626-1643
0.002
0
6mer
1356-1378
0.001
1
6mer
1410-1429
0.001
3
LINC01002
hsa-miR-657
0.777
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000614996
Biotype: lincRNA
Gene id: ENSG00000206082
Gene Name: LINC01002
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1183-1209
0.012
1
6mer
1161-1187
0.008
1
6mer
317-338
0.006
1
6mer
57-72
0.005
0
XLOC_003240
hsa-miR-657
0.776
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006650
Biotype: transcript isomorph
Gene id: XLOC_003240
Gene Name: XLOC_003240
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
661-687
0.004
1
6mer
9109-9119
0.004
1
6mer
9010-9031
0.004
2
6mer
8874-8895
0.004
1
6mer
9016-9031
0.003
1
6mer
9022-9031
0.002
0
6mer
2675-2700
0.002
0
6mer
9028-9038
0.002
Not Conserved
6mer
4688-4700
0.002
1
6mer
1814-1840
0.002
1
6mer
6586-6610
0.002
0
6mer
4568-4594
0.001
0
6mer
6499-6518
0.001
1
PLCXD2-AS1
hsa-miR-657
0.776
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000493131
Biotype: antisense
Gene id: ENSG00000240766
Gene Name: PLCXD2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-59
0.018
6
6mer
92-100
0.013
7
RP4-714D9.5
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000564623
Biotype: sense_overlapping
Gene id: ENSG00000261254
Gene Name: RP4-714D9.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
410-429
0.028
Not Conserved
7mer
1266-1282
0.002
Not Conserved
6mer
2112-2131
0.001
0
XLOC_007638
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016264
Biotype: transcript isomorph
Gene id: XLOC_007638
Gene Name: XLOC_007638
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-141
0.025
0
6mer
3-20
0.005
1
RP1-302G2.5
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000573382
Biotype: lincRNA
Gene id: ENSG00000262179
Gene Name: RP1-302G2.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
121-143
0.010
8
7mer
744-762
0.008
1
6mer
27-51
0.006
4
6mer
80-100
0.003
Not Conserved
6mer
583-610
0.003
1
RP1-232N11.2
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000457704
Biotype: antisense
Gene id: ENSG00000229042
Gene Name: RP1-232N11.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
299-311
0.021
2
6mer
1876-1901
0.005
2
6mer
700-714
0.005
3
XLOC_009191
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019368
Biotype: transcript isomorph
Gene id: XLOC_009191
Gene Name: XLOC_009191
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
K562 Blood Cancer/Malignant
- Breast Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1779-1801
0.013
1
6mer
1797-1821
0.011
2
6mer
763-784
0.004
1
6mer
1563-1585
0.002
0
RP11-545G3.1
hsa-miR-657
0.775
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000492054
Biotype: lincRNA
Gene id: ENSG00000241449
Gene Name: RP11-545G3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
54-76
0.015
Not Conserved
7mer
17-37
0.011
Not Conserved
7mer
163-180
0.004
0
LINC01001
hsa-miR-657
0.774
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: NR_028326.1
Biotype: lincRNA
Gene id: NR_028326.1 (gene)
Gene Name: LINC01001
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4190-4211
0.004
0
6mer
329-351
0.003
0
6mer
571-595
0.003
0
6mer
436-458
0.002
0
6mer
297-318
0.002
0
6mer
3934-3953
0.002
Not Conserved
6mer
293-318
0.001
Not Conserved
6mer
3285-3306
0.001
Not Conserved
6mer
963-982
0.001
Not Conserved
6mer
3838-3859
0.001
Not Conserved
6mer
2560-2587
0.001
Not Conserved
6mer
3612-3633
0.001
Not Conserved
6mer
3035-3053
0.001
Not Conserved
6mer
2786-2808
0.001
0
6mer
1432-1458
0.001
Not Conserved
6mer
3000-3024
0.001
0
6mer
2887-2910
0.001
0
6mer
3190-3212
0.001
Not Conserved
6mer
2265-2284
0.001
Not Conserved
6mer
2069-2090
0.000
Not Conserved
6mer
3281-3306
0.000
Not Conserved
6mer
2305-2331
0.000
Not Conserved
6mer
2198-2223
0.000
Not Conserved
6mer
2429-2450
0.000
Not Conserved
6mer
1966-1990
0.000
Not Conserved
6mer
2750-2775
0.000
Not Conserved
6mer
2065-2090
0.000
Not Conserved
XLOC_012462
hsa-miR-657
0.774
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025629
Biotype: transcript isomorph
Gene id: XLOC_012462
Gene Name: XLOC_012462
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
213-238
0.031
8
RP11-57A19.2
hsa-miR-657
0.774
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000501520
Biotype: lincRNA
Gene id: ENSG00000246465
Gene Name: RP11-57A19.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1039-1056
0.011
1
6mer
2115-2141
0.004
0
6mer
2444-2449
0.004
1
6mer
2440-2448
0.003
1
6mer
575-598
0.003
0
6mer
441-462
0.002
0
6mer
2078-2105
0.002
0
6mer
1995-2018
0.002
0
FAM27L
hsa-miR-657
0.773
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000426869
Biotype: lincRNA
Gene id: ENSG00000178130
Gene Name: FAM27L
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
522-547
0.017
1
6mer
251-263
0.014
1
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