LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
LINC00894
hsa-miR-657
0.786
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000452864
Biotype: antisense
Gene id: ENSG00000235703
Gene Name: LINC00894
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
339-357
0.018
0
7mer
56-82
0.009
Not Conserved
6mer
518-541
0.003
Not Conserved
6mer
325-339
0.002
Not Conserved
RP11-268F1.3
hsa-miR-657
0.785
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000438738
Biotype: lincRNA
Gene id: ENSG00000236164
Gene Name: RP11-268F1.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-724
0.022
1
7mer
136-151
0.010
0
DLX6-AS1
hsa-miR-657
0.785
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1180-1191
0.011
3
8mer
13055-13079
0.005
0
7mer
15000-15023
0.005
0
6mer
15135-15161
0.004
1
7mer
3558-3581
0.003
1
7mer
3064-3077
0.002
1
6mer
11071-11092
0.001
Not Conserved
6mer
5398-5420
0.001
0
6mer
12946-12966
0.001
1
XLOC_004297
hsa-miR-657
0.785
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009876
Biotype: transcript isomorph
Gene id: XLOC_004297
Gene Name: XLOC_004297
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
Fibroblasts Lung Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
417-444
0.032
1
XLOC_013235
hsa-miR-657
0.784
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026839
Biotype: transcript isomorph
Gene id: XLOC_013235
Gene Name: XLOC_013235
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
34-58
0.020
1
7mer
2642-2665
0.007
0
6mer
2469-2495
0.003
0
6mer
2433-2459
0.001
0
XLOC_002780
hsa-miR-657
0.784
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006177
Biotype: transcript isomorph
Gene id: XLOC_002780
Gene Name: XLOC_002780
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1297-1315
0.012
0
7mer
683-705
0.008
1
6mer
457-483
0.007
4
6mer
1588-1602
0.002
0
6mer
949-973
0.002
1
XLOC_006128
hsa-miR-657
0.784
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
35-57
0.018
1
6mer
1121-1143
0.008
0
6mer
306-317
0.006
0
RP11-46E17.8
hsa-miR-657
0.783
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624632
Biotype: lincRNA
Gene id: ENSG00000280391
Gene Name: RP11-46E17.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8234-8257
0.006
0
7mer
2395-2416
0.005
2
6mer
9153-9176
0.004
1
6mer
7783-7798
0.002
4
7mer
7870-7888
0.002
1
6mer
6279-6283
0.002
1
6mer
4672-4692
0.002
1
6mer
5304-5331
0.002
3
6mer
7615-7635
0.002
2
6mer
1106-1117
0.001
Not Conserved
6mer
6588-6611
0.001
0
7mer
6280-6302
0.001
2
6mer
4763-4778
0.001
1
6mer
4851-4875
0.001
0
6mer
6329-6351
0.000
0
RP11-1084I9.1
hsa-miR-657
0.783
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000383019
Biotype: lincRNA
Gene id: ENSG00000206187
Gene Name: RP11-1084I9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-457
0.012
1
6mer
348-375
0.005
1
7mer
1028-1051
0.005
1
7mer
1660-1676
0.004
Not Conserved
6mer
958-984
0.003
1
6mer
549-566
0.002
1
6mer
506-530
0.001
0
AC005154.6
hsa-miR-657
0.783
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000578245
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
64-76
0.032
2
XLOC_005558
hsa-miR-657
0.782
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012027
Biotype: transcript isomorph
Gene id: XLOC_005558
Gene Name: XLOC_005558
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
81-103
0.021
1
6mer
99-125
0.011
1
RP11-473C18.3
hsa-miR-657
0.782
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565685
Biotype: antisense
Gene id: ENSG00000261687
Gene Name: RP11-473C18.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
331-350
0.032
2
LL22NC03-22D1.1
hsa-miR-657
0.781
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2318-2344
0.006
0
6mer
28577-28586
0.005
1
7mer
24742-24765
0.003
0
6mer
17911-17934
0.002
2
7mer
22134-22161
0.002
1
6mer
27475-27499
0.002
1
6mer
8023-8047
0.001
0
6mer
24630-24652
0.001
0
7mer
1216-1235
0.001
Not Conserved
6mer
1147-1173
0.001
1
6mer
24089-24114
0.001
0
6mer
26879-26900
0.001
0
6mer
6208-6223
0.001
0
6mer
14983-15004
0.001
0
6mer
23620-23637
0.001
1
6mer
16011-16030
0.001
Not Conserved
RP11-493P1.2
hsa-miR-657
0.781
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000549725
Biotype: antisense
Gene id: ENSG00000258034
Gene Name: RP11-493P1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-216
0.031
6
SAP30L-AS1
hsa-miR-657
0.780
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000519727
Biotype: antisense
Gene id: ENSG00000245275
Gene Name: SAP30L-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-60
0.031
2
TPT1-AS1
hsa-miR-657
0.780
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000523445
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
638-665
0.006
0
6mer
341-368
0.005
0
7mer
787-803
0.005
0
6mer
496-523
0.004
0
7mer
700-727
0.004
Not Conserved
7mer
559-586
0.004
0
7mer
428-444
0.003
0
RP3-412A9.17
hsa-miR-657
0.780
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623789
Biotype: sense_overlapping
Gene id: ENSG00000278920
Gene Name: RP3-412A9.17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
9165-9186
0.003
2
6mer
14354-14368
0.003
5
6mer
15698-15724
0.002
0
6mer
16222-16237
0.002
0
6mer
4354-4374
0.002
2
6mer
16013-16039
0.002
0
6mer
15897-15915
0.002
Not Conserved
6mer
15375-15385
0.002
1
6mer
13807-13833
0.002
2
6mer
3002-3028
0.002
1
7mer
4934-4956
0.002
1
6mer
9415-9441
0.002
0
6mer
16156-16177
0.001
Not Conserved
6mer
7664-7685
0.001
0
6mer
16049-16076
0.001
Not Conserved
6mer
3148-3171
0.001
0
6mer
6795-6821
0.001
1
6mer
4371-4390
0.000
1
TEN1-CDK3
hsa-miR-657
0.779
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: NR_037709.1
Biotype: sense
Gene id: NR_037709.1 (gene)
Gene Name: TEN1-CDK3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
585-608
0.008
3
8mer
2217-2236
0.007
5
8mer+wobble
2598-2623
0.005
8
7mer
3044-3071
0.003
1
6mer
3050-3076
0.002
0
6mer
2878-2904
0.002
2
6mer
3013-3036
0.002
1
6mer
684-704
0.002
3
6mer
1513-1530
0.000
1
RP11-440G9.1
hsa-miR-657
0.779
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000447311
Biotype: lincRNA
Gene id: ENSG00000236366
Gene Name: RP11-440G9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2223-2235
0.028
5
6mer
1483-1505
0.003
1
LINC00877
hsa-miR-657
0.779
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000468646
Biotype: lincRNA
Gene id: ENSG00000241163
Gene Name: LINC00877
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-394
0.016
1
6mer
2330-2346
0.004
0
6mer
684-693
0.004
2
6mer
41-68
0.004
0
6mer
1819-1839
0.002
1
6mer
1799-1819
0.001
Not Conserved
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