LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
AC093901.1
hsa-miR-657
0.796
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449075
Biotype: lincRNA
Gene id: ENSG00000226856
Gene Name: AC093901.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
316-342
0.017
10
6mer
161-186
0.008
10
6mer
433-457
0.008
9
MKX-AS1
hsa-miR-657
0.795
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000412244
Biotype: antisense
Gene id: ENSG00000230500
Gene Name: MKX-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9-35
0.030
0
6mer
257-280
0.003
1
CTD-2623N2.11
hsa-miR-657
0.795
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000591174
Biotype: lincRNA
Gene id: ENSG00000267289
Gene Name: CTD-2623N2.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
543-566
0.018
1
8mer
219-230
0.011
0
6mer
668-687
0.003
0
RP11-727A23.5
hsa-miR-657
0.794
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000500634
Biotype: lincRNA
Gene id: ENSG00000247137
Gene Name: RP11-727A23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
436-442
0.033
1
RP4-671O14.7
hsa-miR-657
0.793
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624215
Biotype: antisense
Gene id: ENSG00000280011
Gene Name: RP4-671O14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
18947-18973
0.007
0
6mer
18742-18768
0.006
0
9mer
7209-7231
0.006
0
6mer
4104-4108
0.002
1
6mer
8847-8870
0.001
0
6mer
10979-11005
0.001
0
6mer
13262-13277
0.001
3
6mer
17612-17628
0.001
0
6mer
6611-6637
0.001
Not Conserved
6mer
8051-8078
0.001
0
6mer
7865-7886
0.001
0
6mer
10664-10689
0.001
2
6mer
10689-10705
0.001
1
6mer
11165-11187
0.001
0
6mer
11091-11115
0.000
0
6mer
10478-10502
0.000
1
6mer
10646-10668
0.000
0
RP13-216E22.5
hsa-miR-657
0.792
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000603360
Biotype: sense_overlapping
Gene id: ENSG00000271199
Gene Name: RP13-216E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
67-90
0.033
0
CTD-3162L10.1
hsa-miR-657
0.792
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600983
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2035-2058
0.011
1
6mer
326-346
0.008
1
6mer
1885-1911
0.008
1
7mer
1929-1948
0.006
0
CTD-3162L10.1
hsa-miR-657
0.792
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000586340
Biotype: lincRNA
Gene id: ENSG00000267053
Gene Name: CTD-3162L10.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2035-2058
0.011
1
6mer
326-346
0.008
1
6mer
1885-1911
0.008
1
7mer
1929-1948
0.006
0
LOC100128885
hsa-miR-657
0.790
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_077227.1
Biotype: lincRNA
Gene id: NR_077227.1 (gene)
Gene Name: LOC100128885
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1001-1011
0.006
0
6mer
1582-1586
0.004
0
6mer
772-787
0.004
0
6mer
615-637
0.003
0
6mer
3433-3453
0.003
0
6mer
3251-3278
0.003
0
6mer
3627-3654
0.002
0
6mer
1226-1249
0.002
0
6mer
1951-1966
0.002
0
6mer
2020-2038
0.002
0
ZNRD1-AS1
hsa-miR-657
0.790
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000622469
Biotype: antisense
Gene id: ENSG00000204623
Gene Name: ZNRD1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
485-512
0.009
4
7mer
303-316
0.009
0
6mer
454-475
0.004
2
6mer
1030-1053
0.004
1
6mer
967-988
0.003
1
6mer
574-590
0.003
1
XLOC_012041
hsa-miR-657
0.789
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024306
Biotype: transcript isomorph
Gene id: XLOC_012041
Gene Name: XLOC_012041
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
364-385
0.010
1
6mer
421-441
0.006
1
7mer
6750-6776
0.004
0
7mer
5648-5667
0.004
0
6mer
223-237
0.003
2
6mer
624-649
0.002
Not Conserved
6mer
1387-1413
0.001
1
6mer
927-946
0.001
1
6mer
5548-5572
0.001
0
RP11-727A23.5
hsa-miR-657
0.788
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000624533
Biotype: TEC
Gene id: ENSG00000247137
Gene Name: RP11-727A23.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1667-1673
0.026
1
7mer
2061-2083
0.006
0
XLOC_004167
hsa-miR-657
0.788
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008651
Biotype: transcript isomorph
Gene id: XLOC_004167
Gene Name: XLOC_004167
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3592-3611
0.022
1
7mer
579-601
0.010
0
RP11-774O3.3
hsa-miR-657
0.788
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505448
Biotype: lincRNA
Gene id: ENSG00000251615
Gene Name: RP11-774O3.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-637
0.018
1
6mer
2216-2230
0.003
1
7mer
1998-2003
0.002
0
7mer
1585-1590
0.002
0
7mer
2049-2054
0.002
0
6mer
1738-1743
0.001
0
7mer
1947-1952
0.001
0
7mer
1534-1539
0.001
0
6mer
2100-2115
0.001
0
6mer
1687-1698
0.000
Not Conserved
RP11-436I24.1
hsa-miR-657
0.788
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027114.2
Biotype: antisense
Gene id: NR_027114.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-244
0.031
0
6mer
1383-1401
0.001
Not Conserved
RP11-89N17.4
hsa-miR-657
0.787
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000420185
Biotype: lincRNA
Gene id: ENSG00000236494
Gene Name: RP11-89N17.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
469-475
0.022
0
8mer
800-816
0.007
1
6mer
988-1011
0.003
1
XLOC_011064
hsa-miR-657
0.787
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022786
Biotype: transcript isomorph
Gene id: XLOC_011064
Gene Name: XLOC_011064
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3362-3383
0.030
5
6mer
1025-1048
0.002
1
AC013401.1
hsa-miR-657
0.787
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414394
Biotype: lincRNA
Gene id: ENSG00000229395
Gene Name: AC013401.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
187-213
0.028
1
6mer
297-315
0.004
0
KRT73-AS1
hsa-miR-657
0.787
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000552364
Biotype: antisense
Gene id: ENSG00000257495
Gene Name: KRT73-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3485-3509
0.010
5
6mer
743-767
0.010
12
6mer
1331-1357
0.003
8
6mer
1058-1080
0.002
4
6mer
1893-1919
0.002
3
6mer
3230-3252
0.002
Not Conserved
6mer
2751-2765
0.002
2
6mer
3249-3262
0.001
1
FAM215B
hsa-miR-657
0.786
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000458392
Biotype: sense_intronic
Gene id: ENSG00000232300
Gene Name: FAM215B
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1619-1642
0.025
Not Conserved
6mer
198-223
0.003
1
6mer
288-308
0.002
Not Conserved
6mer
1151-1174
0.001
Not Conserved
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