LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-15H20.6
hsa-miR-657
0.799
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
138-153
0.019
1
6mer
305-331
0.014
1
RP5-1198O20.4
hsa-miR-657
0.799
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000447959
Biotype: lincRNA
Gene id: ENSG00000230615
Gene Name: RP5-1198O20.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
610-621
0.033
1
RP11-384K6.6
hsa-miR-657
0.799
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000567913
Biotype: lincRNA
Gene id: ENSG00000260404
Gene Name: RP11-384K6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4338-4362
0.007
1
8mer
3822-3836
0.006
Not Conserved
6mer
4023-4044
0.002
0
6mer
3896-3917
0.002
Not Conserved
6mer
1282-1303
0.002
0
6mer
2186-2207
0.001
0
6mer
1540-1559
0.001
0
6mer
4212-4233
0.001
Not Conserved
6mer
1860-1881
0.001
0
6mer
2443-2461
0.001
0
6mer
2791-2813
0.001
Not Conserved
6mer
3323-3344
0.001
Not Conserved
6mer
2280-2302
0.001
0
6mer
2630-2649
0.001
Not Conserved
6mer
3105-3123
0.001
Not Conserved
6mer
3005-3026
0.001
Not Conserved
6mer
2186-2211
0.001
0
6mer
2856-2881
0.000
Not Conserved
6mer
3134-3155
0.000
Not Conserved
6mer
2472-2493
0.000
Not Conserved
RP11-514P8.8
hsa-miR-657
0.799
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000481893
Biotype: processed_transcript
Gene id: ENSG00000272949
Gene Name: RP11-514P8.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
214-231
0.006
4
7mer
2758-2782
0.006
0
6mer
702-727
0.006
9
6mer
3116-3136
0.004
2
6mer
458-481
0.003
5
6mer
1200-1204
0.003
7
7mer
2477-2503
0.003
4
8mer
1730-1752
0.001
1
6mer
2295-2319
0.001
5
6mer
1569-1591
0.001
1
6mer
1835-1854
0.001
0
6mer
2262-2284
0.000
0
RP11-120E13.1
hsa-miR-657
0.799
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000437334
Biotype: lincRNA
Gene id: ENSG00000226134
Gene Name: RP11-120E13.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-124
0.026
1
6mer
247-270
0.007
2
SLC25A25-AS1
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000418747
Biotype: antisense
Gene id: ENSG00000234771
Gene Name: SLC25A25-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
199-225
0.014
2
6mer
6206-6229
0.006
3
6mer
5343-5366
0.003
4
6mer
5157-5182
0.002
1
6mer
4325-4345
0.002
1
6mer
2943-2969
0.001
0
7mer
2808-2831
0.001
0
6mer
3312-3335
0.001
0
6mer
1529-1555
0.001
1
6mer
4676-4695
0.001
1
6mer
1685-1706
0.001
Not Conserved
6mer
4655-4680
0.001
1
XLOC_004989
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010469
Biotype: transcript isomorph
Gene id: XLOC_004989
Gene Name: XLOC_004989
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1696-1715
0.016
1
6mer
1861-1887
0.005
1
6mer
1396-1409
0.004
0
7mer
848-854
0.004
1
6mer
787-810
0.002
1
6mer
1579-1605
0.002
0
XLOC_012619
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026594
Biotype: transcript isomorph
Gene id: XLOC_012619
Gene Name: XLOC_012619
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
180-198
0.028
3
6mer
98-116
0.005
3
XLOC_001401
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003609
Biotype: transcript isomorph
Gene id: XLOC_001401
Gene Name: XLOC_001401
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1303-1327
0.033
0
LINC00893
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000451969
Biotype: antisense
Gene id: ENSG00000241769
Gene Name: LINC00893
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
664-690
0.013
1
7mer
389-407
0.010
2
6mer
205-228
0.005
1
6mer
407-421
0.004
1
LOC648987
hsa-miR-657
0.798
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_034085.1
Biotype: lincRNA
Gene id: NR_034085.1 (gene)
Gene Name: LOC648987
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
462-489
0.018
1
6mer
2713-2739
0.010
1
6mer
713-739
0.006
1
RP11-44M6.7
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000485071
Biotype: retained_intron
Gene id: ENSG00000274272
Gene Name: RP11-44M6.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
4237-4256
0.006
6
7mer
4355-4372
0.004
1
6mer
3293-3320
0.004
8
7mer
3526-3549
0.003
1
6mer
812-837
0.002
0
6mer
480-505
0.002
0
7mer
736-741
0.001
Not Conserved
6mer
3481-3498
0.001
2
6mer
1818-1839
0.001
0
6mer
3656-3682
0.001
2
6mer
2986-3004
0.001
0
6mer
2053-2076
0.001
0
6mer
2433-2455
0.001
0
6mer
2723-2742
0.001
0
6mer
3650-3674
0.001
Not Conserved
6mer
2917-2937
0.001
1
6mer
2866-2886
0.001
0
6mer
2256-2279
0.001
0
6mer
1530-1555
0.001
Not Conserved
6mer
2834-2854
0.000
0
6mer
2965-2985
0.000
0
6mer
2949-2969
0.000
0
6mer
2250-2268
0.000
0
6mer
2981-3004
0.000
0
CTC-451A6.4
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000442497
Biotype: lincRNA
Gene id: ENSG00000180081
Gene Name: CTC-451A6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
371-384
0.021
0
7mer
1307-1322
0.011
0
6mer
2052-2079
0.002
0
XLOC_007978
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017167
Biotype: transcript isomorph
Gene id: XLOC_007978
Gene Name: XLOC_007978
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
81-101
0.033
0
AC011288.2
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000443947
Biotype: lincRNA
Gene id: ENSG00000229618
Gene Name: AC011288.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
139-163
0.022
4
6mer
159-181
0.005
2
6mer
232-253
0.003
Not Conserved
6mer
216-240
0.003
Not Conserved
AC023469.1
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000409243
Biotype: lincRNA
Gene id: ENSG00000222031
Gene Name: AC023469.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
91-111
0.033
2
AP000233.3
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426609
Biotype: lincRNA
Gene id: ENSG00000223870
Gene Name: AP000233.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
194-219
0.033
1
CTD-3118D7.1
hsa-miR-657
0.797
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558671
Biotype: sense_intronic
Gene id: ENSG00000259690
Gene Name: CTD-3118D7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-332
0.031
1
6mer
3109-3129
0.002
0
XLOC_005435
hsa-miR-657
0.796
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011925
Biotype: transcript isomorph
Gene id: XLOC_005435
Gene Name: XLOC_005435
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-326
0.033
1
PCAT19
hsa-miR-657
0.796
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000595837
Biotype: lincRNA
Gene id: ENSG00000267107
Gene Name: PCAT19
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
193-207
0.018
1
6mer
421-433
0.015
1
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