LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
LCMT1-AS2
hsa-miR-657
0.804
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562280
Biotype: antisense
Gene id: ENSG00000260034
Gene Name: LCMT1-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1682-1700
0.020
1
7mer
936-961
0.008
0
8mer+mismatch
1748-1772
0.005
0
RP11-538D16.2
hsa-miR-657
0.804
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000411509
Biotype: lincRNA
Gene id: ENSG00000224810
Gene Name: RP11-538D16.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
66-82
0.020
1
7mer
1774-1795
0.008
0
7mer
2288-2312
0.004
Not Conserved
6mer
1827-1852
0.002
0
AC011288.2
hsa-miR-657
0.804
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000411542
Biotype: lincRNA
Gene id: ENSG00000229618
Gene Name: AC011288.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
MCF7 Mammary Gland Cancer/Malignant
- Placenta Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
58-82
0.023
4
6mer
78-100
0.006
2
6mer
288-311
0.005
1
XLOC_008301
hsa-miR-657
0.804
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017580
Biotype: transcript isomorph
Gene id: XLOC_008301
Gene Name: XLOC_008301
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
484-506
0.017
0
7mer
773-796
0.017
0
XLOC_008302
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017581
Biotype: transcript isomorph
Gene id: XLOC_008302
Gene Name: XLOC_008302
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
484-506
0.017
0
7mer
773-796
0.017
0
RP11-61I13.3
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000607675
Biotype: antisense
Gene id: ENSG00000235033
Gene Name: RP11-61I13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3605-3629
0.008
12
7mer
920-942
0.005
2
6mer
3551-3567
0.005
6
6mer
575-597
0.005
5
6mer
1289-1309
0.003
10
6mer
172-199
0.003
1
6mer
627-643
0.002
0
6mer
2611-2634
0.001
1
6mer
2547-2572
0.001
0
XLOC_008332
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
840-862
0.017
0
7mer
550-573
0.017
0
FAM27C
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: NR_027421.1
Biotype: sense
Gene id: NR_027421.1 (gene)
Gene Name: FAM27C
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
548-568
0.019
0
6mer
263-274
0.015
0
TTTY4C
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000456123
Biotype: lincRNA
Gene id: ENSG00000228296
Gene Name: TTTY4C
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
841-863
0.017
0
7mer
551-574
0.017
0
TTTY4B
hsa-miR-657
0.803
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
484-506
0.017
0
7mer
773-796
0.017
0
LINC00265
hsa-miR-657
0.802
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000340510
Biotype: lincRNA
Gene id: ENSG00000188185
Gene Name: LINC00265
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
169-194
0.007
1
7mer
1044-1070
0.003
1
6mer
2896-2916
0.003
0
6mer
2958-2983
0.003
0
6mer
2602-2621
0.003
0
6mer
2731-2752
0.002
0
6mer
2374-2396
0.002
1
6mer
2850-2876
0.002
0
6mer
2632-2653
0.002
0
6mer
1877-1898
0.002
1
6mer
2160-2184
0.002
1
6mer
2273-2296
0.001
2
6mer
2407-2432
0.001
Not Conserved
6mer
2034-2055
0.001
0
RP11-327I22.5
hsa-miR-657
0.802
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000621949
Biotype: lincRNA
Gene id: ENSG00000278849
Gene Name: RP11-327I22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
584-591
0.017
0
6mer
635-639
0.016
0
TTTY4
hsa-miR-657
0.802
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
484-506
0.017
0
7mer
773-796
0.017
0
AC005154.6
hsa-miR-657
0.802
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000582838
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
67-79
0.034
2
RP11-523O18.5
hsa-miR-657
0.802
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610464
Biotype: retained_intron
Gene id: ENSG00000233665
Gene Name: RP11-523O18.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
598-621
0.017
0
6mer
824-849
0.007
3
7mer
326-351
0.006
1
6mer
9-25
0.004
3
XLOC_013263
hsa-miR-657
0.801
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027223
Biotype: transcript isomorph
Gene id: XLOC_013263
Gene Name: XLOC_013263
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3248-3273
0.021
1
6mer
3054-3077
0.007
0
6mer
1170-1196
0.004
0
6mer
1133-1152
0.002
0
LINC01000
hsa-miR-657
0.801
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_024368.1
Biotype: lincRNA
Gene id: NR_024368.1 (gene)
Gene Name: LINC01000
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
630-651
0.003
1
6mer
888-907
0.002
0
6mer
8453-8473
0.002
0
6mer
1193-1214
0.001
0
7mer
5204-5231
0.001
1
6mer
5443-5469
0.001
1
6mer
5559-5577
0.001
1
6mer
3789-3813
0.001
1
6mer
1520-1541
0.001
Not Conserved
6mer
6991-7011
0.001
0
6mer
982-1003
0.001
0
6mer
5128-5151
0.001
1
6mer
4033-4055
0.001
1
6mer
3403-3422
0.001
0
6mer
6207-6233
0.001
0
6mer
2247-2266
0.001
Not Conserved
6mer
1773-1791
0.001
Not Conserved
6mer
2736-2757
0.001
1
6mer
2927-2953
0.001
0
6mer
2495-2521
0.001
0
6mer
7397-7424
0.001
Not Conserved
6mer
2018-2040
0.001
0
7mer
5479-5503
0.001
1
6mer
5676-5697
0.001
0
6mer
3926-3948
0.001
0
6mer
2542-2561
0.001
0
6mer
1614-1636
0.001
Not Conserved
7mer
2051-2076
0.001
Not Conserved
6mer
1802-1826
0.001
0
6mer
1916-1939
0.000
0
6mer
3500-3521
0.000
0
6mer
4066-4091
0.000
0
6mer
2603-2628
0.000
0
6mer
1520-1545
0.000
Not Conserved
6mer
2376-2397
0.000
Not Conserved
6mer
2736-2761
0.000
0
RP11-13K12.2
hsa-miR-657
0.801
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592572
Biotype: lincRNA
Gene id: ENSG00000267665
Gene Name: RP11-13K12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3948-3972
0.010
1
7mer
3651-3677
0.010
1
8mer+mismatch
197-221
0.003
0
6mer
560-579
0.002
1
6mer
1222-1244
0.002
3
6mer
2762-2786
0.002
1
6mer
3172-3187
0.002
Not Conserved
6mer
3328-3354
0.001
1
6mer
2842-2859
0.001
1
6mer
2855-2873
0.001
2
CASC8
hsa-miR-657
0.800
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523825
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
414-437
0.019
2
8mer
140-160
0.010
1
6mer
99-120
0.004
1
LINC00370
hsa-miR-657
0.800
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000455487
Biotype: lincRNA
Gene id: ENSG00000223617
Gene Name: LINC00370
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-210
0.026
1
6mer
129-145
0.004
0
6mer
165-187
0.003
0
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