LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
RP11-318C2.1
hsa-miR-657
0.816
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532930
Biotype: antisense
Gene id: ENSG00000255159
Gene Name: RP11-318C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
32-57
0.021
2
6mer
492-496
0.006
3
6mer
727-746
0.006
3
6mer
532-557
0.003
1
RP1-29C18.10
hsa-miR-657
0.816
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000391625
Biotype: lincRNA
Gene id: ENSG00000212939
Gene Name: RP1-29C18.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-213
0.007
0
7mer
235-258
0.005
Not Conserved
7mer
280-303
0.004
Not Conserved
7mer
325-348
0.004
Not Conserved
7mer
460-483
0.004
0
7mer
370-393
0.004
Not Conserved
7mer
415-438
0.004
Not Conserved
6mer
3233-3259
0.002
Not Conserved
7mer
1277-1295
0.001
Not Conserved
XLOC_006753
hsa-miR-657
0.816
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015261
Biotype: transcript isomorph
Gene id: XLOC_006753
Gene Name: XLOC_006753
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5790-5811
0.023
10
9mer
3955-3968
0.003
4
7mer
4354-4378
0.002
Not Conserved
6mer
5595-5619
0.001
1
6mer
5339-5366
0.001
4
6mer
3622-3644
0.001
1
6mer
2419-2441
0.001
2
6mer
2285-2300
0.001
0
6mer
3764-3783
0.001
1
6mer
5373-5400
0.001
4
6mer
3846-3865
0.001
1
AC138035.2
hsa-miR-657
0.813
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000499986
Biotype: lincRNA
Gene id: ENSG00000238035
Gene Name: AC138035.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
315-341
0.024
1
6mer
337-363
0.011
1
TPT1-AS1
hsa-miR-657
0.813
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000524062
Biotype: retained_intron
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
243-270
0.004
0
7mer
1171-1190
0.004
0
6mer
172-195
0.004
0
7mer
1207-1229
0.004
Not Conserved
6mer
398-425
0.003
0
6mer
540-567
0.003
0
7mer
330-346
0.003
0
7mer
461-488
0.003
0
7mer
602-629
0.002
Not Conserved
6mer
1347-1374
0.002
0
7mer
1424-1440
0.001
Not Conserved
7mer
1279-1295
0.001
0
XLOC_014347
hsa-miR-657
0.813
mTTBlnEmP

Gene Details
Chromosome: chr22
Transcript: TCONS_00029677
Biotype: transcript isomorph
Gene id: XLOC_014347
Gene Name: XLOC_014347
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
43-66
0.033
1
6mer
247-269
0.002
Not Conserved
LINC01360
hsa-miR-657
0.812
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440762
Biotype: lincRNA
Gene id: ENSG00000233973
Gene Name: LINC01360
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3532-3545
0.035
1
XLOC_013631
hsa-miR-657
0.812
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028293
Biotype: transcript isomorph
Gene id: XLOC_013631
Gene Name: XLOC_013631
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
184-202
0.029
3
6mer
208-226
0.004
1
6mer
425-451
0.002
Not Conserved
KCNMA1-AS1
hsa-miR-657
0.810
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598613
Biotype: antisense
Gene id: ENSG00000236467
Gene Name: KCNMA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
703-709
0.013
0
7mer
812-828
0.011
2
6mer
101-127
0.006
0
7mer
240-261
0.005
0
RP11-168E17.1
hsa-miR-657
0.810
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515691
Biotype: lincRNA
Gene id: ENSG00000251210
Gene Name: RP11-168E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
56-79
0.020
1
8mer
76-87
0.011
1
6mer
252-274
0.004
1
AC008067.2
hsa-miR-657
0.809
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595478
Biotype: antisense
Gene id: ENSG00000237031
Gene Name: AC008067.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
380-389
0.030
7
6mer
253-278
0.004
3
XLOC_007690
hsa-miR-657
0.809
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00015562
Biotype: transcript isomorph
Gene id: XLOC_007690
Gene Name: XLOC_007690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
200-221
0.018
1
6mer
2573-2596
0.017
1
MGC12916
hsa-miR-657
0.809
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000583262
Biotype: lincRNA
Gene id: ENSG00000266709
Gene Name: MGC12916
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1564-1585
0.019
0
7mer
130-153
0.015
8
XLOC_010535
hsa-miR-657
0.808
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021941
Biotype: transcript isomorph
Gene id: XLOC_010535
Gene Name: XLOC_010535
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
66-88
0.034
1
XLOC_004581
hsa-miR-657
0.807
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009526
Biotype: transcript isomorph
Gene id: XLOC_004581
Gene Name: XLOC_004581
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3505-3523
0.013
7
6mer
3082-3105
0.007
8
6mer
280-296
0.004
2
6mer
606-632
0.003
0
6mer
1040-1058
0.002
2
6mer
1237-1264
0.002
1
6mer
1821-1841
0.001
1
6mer
1058-1080
0.001
2
AC005618.6
hsa-miR-657
0.807
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606901
Biotype: lincRNA
Gene id: ENSG00000272070
Gene Name: AC005618.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2399-2420
0.011
1
8mer
2181-2206
0.009
0
8mer
1927-1951
0.005
1
7mer
1797-1823
0.004
1
6mer
270-296
0.004
1
8mer
1110-1137
0.002
0
RP11-57A19.5
hsa-miR-657
0.807
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000602838
Biotype: lincRNA
Gene id: ENSG00000270118
Gene Name: RP11-57A19.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
325-346
0.018
0
6mer
230-254
0.016
0
XLOC_013826
hsa-miR-657
0.806
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028717
Biotype: transcript isomorph
Gene id: XLOC_013826
Gene Name: XLOC_013826
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
707-734
0.030
2
6mer
486-508
0.004
1
RP11-104J23.2
hsa-miR-657
0.805
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000617747
Biotype: lincRNA
Gene id: ENSG00000278690
Gene Name: RP11-104J23.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
98-123
0.019
1
6mer
233-248
0.015
1
RP11-168E17.1
hsa-miR-657
0.805
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000505386
Biotype: lincRNA
Gene id: ENSG00000251210
Gene Name: RP11-168E17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
25-48
0.020
1
8mer
45-56
0.011
1
6mer
206-227
0.004
1
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