LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-657


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
XLOC_004128
hsa-miR-657
0.826
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007884
Biotype: transcript isomorph
Gene id: XLOC_004128
Gene Name: XLOC_004128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
148-164
0.017
0
6mer
253-275
0.015
0
6mer
34-56
0.003
Not Conserved
RP11-474D1.3
hsa-miR-657
0.826
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_024457.2
Biotype: lincRNA
Gene id: NR_024457.2 (gene)
Gene Name: RP11-474D1.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-395
0.023
0
7mer
3071-3080
0.006
1
6mer
2672-2698
0.005
1
7mer
2539-2563
0.003
0
CHKB-CPT1B
hsa-miR-657
0.825
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_027928.2
Biotype: sense
Gene id: NR_027928.2 (gene)
Gene Name: CHKB-CPT1B
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3815-3841
0.012
11
8mer
3422-3437
0.005
4
7mer
3452-3474
0.005
7
6mer
97-116
0.005
2
7mer
3785-3807
0.004
6
6mer
825-851
0.003
1
6mer
1050-1076
0.003
6
RP11-137H15.4
hsa-miR-657
0.825
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000619737
Biotype: lincRNA
Gene id: ENSG00000276008
Gene Name: RP11-137H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
185-210
0.028
0
7mer
487-508
0.008
2
XLOC_008501
hsa-miR-657
0.825
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017835
Biotype: transcript isomorph
Gene id: XLOC_008501
Gene Name: XLOC_008501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
900-921
0.013
Not Conserved
8mer
1065-1072
0.013
0
7mer
573-596
0.007
0
6mer
693-716
0.004
1
LINC01278
hsa-miR-657
0.824
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000608623
Biotype: retained_intron
Gene id: ENSG00000235437
Gene Name: LINC01278
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-119
0.021
1
6mer
763-784
0.013
1
6mer
4173-4180
0.002
Not Conserved
WDR11-AS1
hsa-miR-657
0.824
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000456120
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-403
0.020
5
6mer
267-274
0.005
3
6mer
1314-1340
0.004
2
6mer
263-271
0.004
2
6mer
702-728
0.003
1
XLOC_002975
hsa-miR-657
0.823
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006356
Biotype: transcript isomorph
Gene id: XLOC_002975
Gene Name: XLOC_002975
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1255-1275
0.029
2
6mer
577-597
0.004
1
6mer
1120-1143
0.003
1
RP1-144F13.3
hsa-miR-657
0.822
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424418
Biotype: antisense
Gene id: ENSG00000225903
Gene Name: RP1-144F13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-263
0.029
2
6mer
128-148
0.007
3
PAX8-AS1
hsa-miR-657
0.822
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000422956
Biotype: antisense
Gene id: ENSG00000189223
Gene Name: PAX8-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
11323-11345
0.008
Not Conserved
8mer
696-719
0.006
3
8mer
10046-10060
0.003
0
7mer
7058-7063
0.003
0
6mer
970-982
0.003
1
6mer
11030-11035
0.003
1
6mer
8433-8458
0.002
6
6mer
4415-4427
0.002
1
6mer
4076-4097
0.001
1
6mer
8177-8202
0.001
0
7mer
2410-2428
0.001
1
6mer
4603-4613
0.001
1
6mer
2381-2404
0.001
0
6mer
970-986
0.001
2
6mer
4707-4734
0.001
3
6mer
2466-2486
0.000
0
RP11-1143G9.5
hsa-miR-657
0.822
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613291
Biotype: lincRNA
Gene id: ENSG00000274979
Gene Name: RP11-1143G9.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4907-4934
0.021
1
7mer
2788-2794
0.005
0
6mer
594-620
0.004
1
6mer
2516-2533
0.004
1
6mer
557-584
0.002
0
RP4-712E4.1
hsa-miR-657
0.820
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439394
Biotype: lincRNA
Gene id: ENSG00000226172
Gene Name: RP4-712E4.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
560-579
0.019
9
6mer
610-633
0.013
9
6mer
66-89
0.003
0
CASC8
hsa-miR-657
0.820
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000501396
Biotype: antisense
Gene id: ENSG00000246228
Gene Name: CASC8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-578
0.019
2
8mer
141-161
0.012
1
6mer
100-121
0.005
1
XLOC_013013
hsa-miR-657
0.820
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026955
Biotype: transcript isomorph
Gene id: XLOC_013013
Gene Name: XLOC_013013
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1110-1125
0.022
0
6mer
224-245
0.006
0
6mer
340-365
0.004
1
7mer
638-664
0.003
0
MIR663AHG
hsa-miR-657
0.819
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000593517
Biotype: retained_intron
Gene id: ENSG00000227195
Gene Name: MIR663AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Lung Normal/Primary
- Testes Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-148
0.035
0
LINC00442
hsa-miR-657
0.819
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000428086
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
281-295
0.011
1
6mer
308-328
0.009
1
6mer
125-139
0.008
1
6mer
1062-1071
0.005
0
6mer
685-709
0.003
0
RP11-290F5.2
hsa-miR-657
0.819
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000317596
Biotype: lincRNA
Gene id: ENSG00000180712
Gene Name: RP11-290F5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Colon Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1889-1915
0.028
1
6mer
399-425
0.003
0
6mer
1273-1296
0.003
Not Conserved
8mer+mismatch
1107-1123
0.002
1
hsa-mir-1587
hsa-miR-657
0.818
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000562814
Biotype: lincRNA
Gene id: ENSG00000261435
Gene Name: hsa-mir-1587
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1620-1637
0.019
2
7mer
81-90
0.012
2
6mer
560-564
0.004
3
DTX2P1-UPK3BP1-PMS2P11
hsa-miR-657
0.818
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000579700
Biotype: processed_transcript
Gene id: ENSG00000265479
Gene Name: DTX2P1-UPK3BP1-PMS2P11
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
802-827
0.014
0
7mer
1058-1063
0.008
2
6mer
438-464
0.007
6
6mer
190-207
0.003
2
7mer
109-128
0.003
1
WDR11-AS1
hsa-miR-657
0.817
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000598981
Biotype: antisense
Gene id: ENSG00000227165
Gene Name: WDR11-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
388-403
0.020
5
6mer
267-274
0.005
3
6mer
1314-1340
0.004
2
6mer
263-271
0.004
2
6mer
702-728
0.003
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept