LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
CTD-2291D10.2
hsa-miR-657
0.833
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
207-234
0.021
0
6mer
604-626
0.013
0
6mer
963-985
0.004
Not Conserved
RP11-680F20.6
hsa-miR-657
0.833
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000529072
Biotype: antisense
Gene id: ENSG00000254967
Gene Name: RP11-680F20.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-113
0.013
8
7mer
608-632
0.007
6
6mer
348-370
0.005
6
7mer
761-781
0.004
2
6mer
628-648
0.002
1
6mer
383-403
0.002
2
6mer
241-265
0.002
0
6mer
501-520
0.001
2
6mer
429-449
0.001
4
RP11-290F5.2
hsa-miR-657
0.833
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_040108.1
Biotype: lincRNA
Gene id: NR_040108.1 (gene)
Gene Name: RP11-290F5.2
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1614-1640
0.028
1
6mer
124-150
0.004
0
6mer
998-1021
0.003
Not Conserved
8mer+mismatch
832-848
0.002
1
LRRC2-AS1
hsa-miR-657
0.833
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599511
Biotype: antisense
Gene id: ENSG00000268324
Gene Name: LRRC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1748-1773
0.023
1
8mer
986-1003
0.014
2
XLOC_006122
hsa-miR-657
0.833
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013474
Biotype: transcript isomorph
Gene id: XLOC_006122
Gene Name: XLOC_006122
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
318-335
0.015
1
6mer
628-649
0.015
1
6mer
79-104
0.007
0
RP11-46A10.5
hsa-miR-657
0.832
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000358073
Biotype: antisense
Gene id: ENSG00000243155
Gene Name: RP11-46A10.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1724-1751
0.023
1
7mer
472-494
0.008
5
6mer
1966-1992
0.004
1
6mer
1501-1514
0.002
1
RP11-883G14.1
hsa-miR-657
0.832
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000567534
Biotype: lincRNA
Gene id: ENSG00000261241
Gene Name: RP11-883G14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1069-1081
0.009
1
6mer
1170-1175
0.008
1
7mer
771-795
0.006
1
6mer
722-743
0.004
1
7mer
862-867
0.004
1
6mer
78-99
0.003
1
6mer
819-840
0.003
1
LINC01258
hsa-miR-657
0.831
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512517
Biotype: lincRNA
Gene id: ENSG00000249534
Gene Name: LINC01258
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
418-438
0.025
1
8mer
1724-1737
0.010
Not Conserved
6mer
794-809
0.002
Not Conserved
CTD-3116E22.8
hsa-miR-657
0.831
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000613300
Biotype: lincRNA
Gene id: ENSG00000277587
Gene Name: CTD-3116E22.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
67-91
0.019
0
6mer
91-112
0.018
0
OSBPL10-AS1
hsa-miR-657
0.831
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000417313
Biotype: antisense
Gene id: ENSG00000232490
Gene Name: OSBPL10-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
116-133
0.022
1
7mer
97-120
0.010
0
6mer
237-263
0.004
0
LINC01001
hsa-miR-657
0.831
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000526704
Biotype: lincRNA
Gene id: ENSG00000230724
Gene Name: LINC01001
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
112-134
0.005
0
6mer
303-327
0.004
0
6mer
1999-2020
0.004
0
6mer
80-101
0.003
0
6mer
219-241
0.003
0
6mer
595-617
0.003
0
6mer
76-101
0.002
Not Conserved
6mer
1743-1762
0.002
Not Conserved
6mer
809-833
0.002
0
6mer
696-719
0.002
0
6mer
844-862
0.002
Not Conserved
6mer
1094-1115
0.001
Not Conserved
6mer
559-584
0.001
Not Conserved
6mer
999-1021
0.001
Not Conserved
6mer
1647-1668
0.001
Not Conserved
6mer
1421-1442
0.001
Not Conserved
6mer
1090-1115
0.001
Not Conserved
RP4-669L17.10
hsa-miR-657
0.830
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_028325.1
Biotype: lincRNA
Gene id: NR_028325.1 (gene)
Gene Name: RP4-669L17.10
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
3776-3800
0.004
1
6mer
4020-4042
0.004
0
6mer
404-425
0.003
0
6mer
4053-4078
0.002
0
6mer
3913-3935
0.002
0
6mer
4053-4074
0.002
0
6mer
662-681
0.002
Not Conserved
6mer
3389-3408
0.002
0
6mer
982-1003
0.002
0
6mer
756-777
0.002
0
6mer
2918-2939
0.001
0
6mer
1309-1330
0.001
Not Conserved
6mer
2028-2055
0.001
Not Conserved
6mer
1807-1829
0.001
0
6mer
1562-1580
0.001
Not Conserved
6mer
2331-2350
0.001
0
6mer
2284-2310
0.001
0
6mer
1591-1615
0.001
0
6mer
1705-1728
0.001
0
6mer
1403-1425
0.001
Not Conserved
6mer
2165-2186
0.001
0
6mer
2625-2649
0.000
0
6mer
2525-2546
0.000
Not Conserved
6mer
1309-1334
0.000
Not Conserved
6mer
2392-2417
0.000
Not Conserved
6mer
1840-1865
0.000
Not Conserved
6mer
2525-2550
0.000
Not Conserved
LINC00638
hsa-miR-657
0.829
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555578
Biotype: lincRNA
Gene id: ENSG00000258701
Gene Name: LINC00638
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
155-181
0.013
1
6mer
2072-2080
0.013
1
6mer
2115-2133
0.011
1
RP13-560N11.1
hsa-miR-657
0.829
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000504249
Biotype: antisense
Gene id: ENSG00000249219
Gene Name: RP13-560N11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
9-27
0.016
1
7mer
24-45
0.007
1
6mer
51-74
0.007
1
6mer
373-389
0.006
2
RP11-391M1.4
hsa-miR-657
0.829
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607057
Biotype: lincRNA
Gene id: ENSG00000272452
Gene Name: RP11-391M1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
153-180
0.019
3
6mer
1861-1886
0.011
2
6mer
1443-1469
0.004
1
6mer
1056-1080
0.002
0
CTC-260E6.6
hsa-miR-657
0.828
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000585498
Biotype: antisense
Gene id: ENSG00000267383
Gene Name: CTC-260E6.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
767-787
0.017
1
6mer
643-667
0.007
0
6mer
630-651
0.006
0
6mer
369-390
0.006
0
PERM1
hsa-miR-657
0.828
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: NR_027693.1
Biotype: sense
Gene id: NR_027693.1 (gene)
Gene Name: PERM1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2436-2461
0.006
2
7mer
2391-2416
0.005
2
7mer
2301-2324
0.004
2
7mer
2256-2281
0.004
0
7mer
2346-2371
0.004
0
7mer
2133-2156
0.004
1
6mer
2910-2934
0.004
5
7mer
1669-1690
0.003
3
6mer
2963-2989
0.002
1
6mer
342-367
0.001
Not Conserved
RP11-115D19.1
hsa-miR-657
0.827
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000506864
Biotype: antisense
Gene id: ENSG00000251095
Gene Name: RP11-115D19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
506-528
0.036
1
FLJ42627
hsa-miR-657
0.827
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_024492.1
Biotype: lincRNA
Gene id: NR_024492.1 (gene)
Gene Name: FLJ42627
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2183-2188
0.008
0
7mer
6821-6843
0.006
Not Conserved
6mer
6866-6891
0.005
4
7mer
4730-4754
0.004
1
6mer
6949-6975
0.003
0
7mer
270-291
0.002
Not Conserved
6mer
287-314
0.002
1
6mer
2888-2903
0.001
1
8mer+mismatch
5078-5102
0.001
1
6mer
5582-5605
0.001
1
6mer
3664-3683
0.001
1
6mer
3117-3141
0.001
1
6mer
3375-3395
0.001
2
6mer
5215-5238
0.001
0
AC007251.2
hsa-miR-657
0.826
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000611915
Biotype: lincRNA
Gene id: ENSG00000277527
Gene Name: AC007251.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
302-315
0.036
6
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