LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
AC012361.1
hsa-miR-657
0.842
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000447260
Biotype: lincRNA
Gene id: ENSG00000236436
Gene Name: AC012361.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
222-245
0.030
1
6mer
1164-1186
0.005
1
6mer
314-339
0.004
3
AC061992.2
hsa-miR-657
0.842
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000586583
Biotype: lincRNA
Gene id: ENSG00000267737
Gene Name: AC061992.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-196
0.029
6
8mer+mismatch
348-371
0.004
2
6mer
284-309
0.003
0
6mer
93-115
0.002
0
RP11-89B16.1
hsa-miR-657
0.842
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000512405
Biotype: sense_intronic
Gene id: ENSG00000249706
Gene Name: RP11-89B16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
656-677
0.027
0
6mer
164-190
0.004
1
6mer
292-310
0.003
1
6mer
306-317
0.003
2
RP11-362K14.7
hsa-miR-657
0.841
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000602913
Biotype: antisense
Gene id: ENSG00000270135
Gene Name: RP11-362K14.7
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
154-178
0.038
6
RP13-820C6.4
hsa-miR-657
0.841
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619709
Biotype: lincRNA
Gene id: ENSG00000274670
Gene Name: RP13-820C6.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
196-215
0.030
0
6mer
108-131
0.007
0
RP11-93B14.9
hsa-miR-657
0.840
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000617703
Biotype: antisense
Gene id: ENSG00000277496
Gene Name: RP11-93B14.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
212-229
0.012
1
7mer
1261-1286
0.011
0
7mer
986-1010
0.007
1
6mer
273-295
0.006
1
6mer
876-888
0.001
Not Conserved
XLOC_011849
hsa-miR-657
0.840
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024536
Biotype: transcript isomorph
Gene id: XLOC_011849
Gene Name: XLOC_011849
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
40-60
0.016
9
6mer
1496-1522
0.004
1
7mer
384-400
0.004
0
7mer
352-375
0.003
Not Conserved
6mer
232-251
0.003
0
7mer
320-343
0.003
Not Conserved
6mer
702-727
0.003
1
6mer
1013-1035
0.002
1
RP11-290F5.1
hsa-miR-657
0.839
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000608785
Biotype: lincRNA
Gene id: ENSG00000249096
Gene Name: RP11-290F5.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
375-389
0.026
2
7mer
39-53
0.012
1
AC005154.6
hsa-miR-657
0.839
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000355837
Biotype: retained_intron
Gene id: ENSG00000196295
Gene Name: AC005154.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2028-2040
0.009
2
8mer
6146-6172
0.008
1
6mer
263-287
0.006
1
6mer
14429-14452
0.002
Not Conserved
6mer
7094-7098
0.002
1
6mer
2911-2932
0.002
1
6mer
8870-8880
0.002
1
7mer
3391-3413
0.002
0
6mer
12746-12772
0.001
0
6mer
10774-10797
0.001
1
6mer
3525-3551
0.001
0
6mer
2763-2781
0.001
1
XLOC_010952
hsa-miR-657
0.838
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022654
Biotype: transcript isomorph
Gene id: XLOC_010952
Gene Name: XLOC_010952
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2099-2122
0.015
2
8mer
1035-1061
0.011
0
6mer
2426-2452
0.005
1
6mer
47-67
0.003
1
6mer
1399-1404
0.002
1
6mer
1569-1593
0.002
1
RP11-774O3.1
hsa-miR-657
0.838
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503186
Biotype: lincRNA
Gene id: ENSG00000248986
Gene Name: RP11-774O3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
177-198
0.018
1
6mer
47-74
0.008
1
6mer
15-38
0.006
1
6mer
363-389
0.005
0
TTN-AS1
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000584485
Biotype: antisense
Gene id: ENSG00000237298
Gene Name: TTN-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
140-166
0.037
7
CTB-131K11.1
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582842
Biotype: antisense
Gene id: ENSG00000266469
Gene Name: CTB-131K11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
434-453
0.019
6
7mer
213-227
0.018
8
AC114776.3
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000414159
Biotype: lincRNA
Gene id: ENSG00000235881
Gene Name: AC114776.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1432-1455
0.027
1
6mer
2740-2767
0.005
1
6mer
1075-1101
0.004
0
VIPR1-AS1
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000452639
Biotype: antisense
Gene id: ENSG00000232354
Gene Name: VIPR1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1230-1256
0.020
0
7mer
279-301
0.008
1
6mer
1142-1167
0.004
3
6mer
392-413
0.003
0
6mer
1128-1146
0.002
0
CTA-929C8.9
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624278
Biotype: sense_intronic
Gene id: ENSG00000279185
Gene Name: CTA-929C8.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
15331-15347
0.009
1
7mer
554-574
0.005
1
6mer
184-210
0.003
1
6mer
881-901
0.003
0
7mer
16046-16062
0.002
0
6mer
5165-5187
0.002
3
6mer
15134-15160
0.002
1
6mer
17102-17124
0.002
1
6mer
11904-11926
0.002
0
6mer
21534-21559
0.002
1
6mer
1081-1105
0.002
0
6mer
18370-18389
0.001
Not Conserved
6mer
17718-17737
0.001
0
6mer
18813-18839
0.001
2
6mer
17757-17765
0.000
1
CTB-187M2.3
hsa-miR-657
0.836
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000582654
Biotype: lincRNA
Gene id: ENSG00000263726
Gene Name: CTB-187M2.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
344-365
0.031
1
7mer
147-171
0.006
0
CTBP1-AS2
hsa-miR-657
0.835
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000578730
Biotype: antisense
Gene id: ENSG00000196810
Gene Name: CTBP1-AS2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2567-2587
0.010
1
6mer
2436-2462
0.008
1
6mer
432-439
0.005
0
6mer
694-713
0.003
0
7mer
1890-1907
0.003
0
7mer
815-836
0.003
0
6mer
1970-1990
0.002
1
6mer
225-248
0.001
Not Conserved
6mer
1998-2018
0.001
0
6mer
282-302
0.001
0
XLOC_012416
hsa-miR-657
0.835
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025586
Biotype: transcript isomorph
Gene id: XLOC_012416
Gene Name: XLOC_012416
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
650-671
0.025
1
7mer
147-170
0.006
0
7mer
1033-1058
0.006
0
LINC01224
hsa-miR-657
0.834
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000600643
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
2185-2207
0.012
1
6mer
1270-1291
0.009
1
6mer
638-649
0.008
1
6mer
1490-1512
0.005
0
6mer
788-806
0.003
0
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