LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-657


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Gene
miRNA
Score
DIANA Links
LINC01198
hsa-miR-657
0.855
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000416521
Biotype: lincRNA
Gene id: ENSG00000231817
Gene Name: LINC01198
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
444-466
0.027
0
7mer
379-397
0.010
0
7mer
303-319
0.003
Not Conserved
CTD-3185P2.1
hsa-miR-657
0.854
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565387
Biotype: antisense
Gene id: ENSG00000261351
Gene Name: CTD-3185P2.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1891-1915
0.017
5
8mer
1842-1863
0.015
2
6mer
80-102
0.004
1
7mer
1716-1740
0.002
1
6mer
1674-1697
0.002
0
RP11-15H20.6
hsa-miR-657
0.854
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596561
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
173-192
0.019
1
6mer
248-263
0.016
1
6mer
112-134
0.004
0
RP11-573D15.8
hsa-miR-657
0.854
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000599314
Biotype: antisense
Gene id: ENSG00000197099
Gene Name: RP11-573D15.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
45-62
0.015
1
6mer
585-611
0.015
9
8mer
308-324
0.010
1
XLOC_004256
hsa-miR-657
0.852
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009843
Biotype: transcript isomorph
Gene id: XLOC_004256
Gene Name: XLOC_004256
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
539-564
0.009
0
7mer
660-675
0.008
0
8mer
824-840
0.006
0
7mer
991-1007
0.004
0
7mer
716-732
0.004
0
6mer
109-124
0.003
0
6mer
159-184
0.003
0
6mer
4596-4616
0.001
Not Conserved
AC093642.3
hsa-miR-657
0.852
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000451070
Biotype: retained_intron
Gene id: ENSG00000237940
Gene Name: AC093642.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
440-461
0.024
0
6mer
422-444
0.016
0
RP11-690J15.1
hsa-miR-657
0.852
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548344
Biotype: lincRNA
Gene id: ENSG00000258312
Gene Name: RP11-690J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
68-94
0.039
2
LINC00442
hsa-miR-657
0.851
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000456737
Biotype: antisense
Gene id: ENSG00000232685
Gene Name: LINC00442
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-300
0.012
1
6mer
313-333
0.009
1
6mer
130-144
0.008
1
6mer
882-902
0.005
1
6mer
1096-1105
0.003
0
6mer
690-714
0.003
0
RP11-809F4.3
hsa-miR-657
0.851
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000562617
Biotype: lincRNA
Gene id: ENSG00000260217
Gene Name: RP11-809F4.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1836-1860
0.026
1
6mer
1702-1723
0.014
1
RP11-323H21.3
hsa-miR-657
0.850
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000444708
Biotype: lincRNA
Gene id: ENSG00000236687
Gene Name: RP11-323H21.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
513-531
0.017
2
6mer
796-817
0.008
3
6mer
9-34
0.006
4
6mer
268-291
0.004
1
6mer
401-424
0.003
1
RP11-436I24.1
hsa-miR-657
0.850
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027113.2
Biotype: antisense
Gene id: NR_027113.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
229-244
0.031
0
6mer
1541-1564
0.009
3
AC016735.2
hsa-miR-657
0.850
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449766
Biotype: lincRNA
Gene id: ENSG00000231826
Gene Name: AC016735.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HMEpC Mammary Gland Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
238-256
0.032
1
6mer
646-669
0.005
2
6mer
635-650
0.002
1
MIR124-2HG
hsa-miR-657
0.850
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520799
Biotype: lincRNA
Gene id: ENSG00000254377
Gene Name: MIR124-2HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
894-915
0.036
3
6mer
363-370
0.003
2
XLOC_013174
hsa-miR-657
0.849
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027635
Biotype: transcript isomorph
Gene id: XLOC_013174
Gene Name: XLOC_013174
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
HMEpC Mammary Gland Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1320-1341
0.020
0
6mer
34-57
0.019
0
RP11-436I24.1
hsa-miR-657
0.848
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000450575
Biotype: antisense
Gene id: ENSG00000235740
Gene Name: RP11-436I24.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
19-34
0.037
0
6mer
1384-1402
0.001
Not Conserved
XLOC_010288
hsa-miR-657
0.847
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021525
Biotype: transcript isomorph
Gene id: XLOC_010288
Gene Name: XLOC_010288
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
286-300
0.012
1
6mer
313-333
0.009
1
6mer
130-144
0.008
1
6mer
882-902
0.005
1
6mer
690-714
0.003
0
6mer
1096-1105
0.003
0
CTD-2308B18.4
hsa-miR-657
0.846
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502809
Biotype: lincRNA
Gene id: ENSG00000248600
Gene Name: CTD-2308B18.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
192-213
0.039
4
RP11-378J18.9
hsa-miR-657
0.845
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000620399
Biotype: lincRNA
Gene id: ENSG00000276997
Gene Name: RP11-378J18.9
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
52-78
0.024
1
6mer
30-56
0.015
1
AC016700.2
hsa-miR-657
0.845
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000455541
Biotype: lincRNA
Gene id: ENSG00000233060
Gene Name: AC016700.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
64-90
0.027
3
6mer
162-184
0.011
5
PAPPA-AS2
hsa-miR-657
0.844
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000438048
Biotype: antisense
Gene id: ENSG00000226604
Gene Name: PAPPA-AS2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-657
Sequence: ggcagguucucacccucucuagg
MirBase ID: MIMAT0003335
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1524-1539
0.018
0
8mer
118-137
0.014
0
6mer
1717-1739
0.004
0
6mer
576-595
0.002
1
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