LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-286B14.1
hsa-miR-654-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000440116
Biotype: lincRNA
Gene id: ENSG00000228971
Gene Name: RP11-286B14.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-53
0.042
9
6mer
180-197
0.002
1
RP4-644L1.2
hsa-miR-654-3p
0.889
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000428495
Biotype: lincRNA
Gene id: ENSG00000229771
Gene Name: RP4-644L1.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1619-1640
0.026
3
7mer
36-54
0.015
3
6mer
560-583
0.003
1
NPSR1-AS1
hsa-miR-654-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000439852
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
667-691
0.045
1
CTD-3023L14.2
hsa-miR-654-3p
0.888
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522661
Biotype: lincRNA
Gene id: ENSG00000253130
Gene Name: CTD-3023L14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
553-569
0.044
1
CTD-2194A8.2
hsa-miR-654-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000575772
Biotype: antisense
Gene id: ENSG00000262995
Gene Name: CTD-2194A8.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
153-159
0.040
1
6mer
99-118
0.004
1
RP11-272L13.3
hsa-miR-654-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000602672
Biotype: lincRNA
Gene id: ENSG00000269998
Gene Name: RP11-272L13.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Ovary Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
779-798
0.044
1
RP11-744K17.1
hsa-miR-654-3p
0.885
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000562182
Biotype: lincRNA
Gene id: ENSG00000261020
Gene Name: RP11-744K17.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
274-291
0.030
1
6mer
3814-3830
0.005
1
6mer
4142-4166
0.005
0
6mer
3854-3877
0.002
0
6mer
1646-1661
0.002
0
RP11-351I21.11
hsa-miR-654-3p
0.884
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000602981
Biotype: lincRNA
Gene id: ENSG00000270074
Gene Name: RP11-351I21.11
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
563-572
0.016
0
7mer
185-202
0.010
0
7mer
1295-1309
0.009
Not Conserved
6mer
1228-1246
0.005
0
7mer
653-677
0.003
Not Conserved
AC012594.1
hsa-miR-654-3p
0.882
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000600436
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-320
0.044
2
RP11-407B7.1
hsa-miR-654-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601913
Biotype: lincRNA
Gene id: ENSG00000230102
Gene Name: RP11-407B7.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-74
0.034
0
7mer
259-286
0.009
1
RP11-1260E13.4
hsa-miR-654-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000573601
Biotype: antisense
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
157-177
0.016
0
8mer
281-301
0.014
0
8mer
219-239
0.014
0
XLOC_006128
hsa-miR-654-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013480
Biotype: transcript isomorph
Gene id: XLOC_006128
Gene Name: XLOC_006128
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
73-89
0.016
1
6mer
1090-1104
0.008
0
6mer
555-579
0.007
0
6mer
173-192
0.005
0
6mer
572-588
0.004
0
6mer
641-657
0.003
0
RP11-227G15.3
hsa-miR-654-3p
0.881
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000581915
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
314-328
0.038
5
6mer
352-373
0.005
5
RP1-228H13.5
hsa-miR-654-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000565390
Biotype: sense_overlapping
Gene id: ENSG00000260920
Gene Name: RP1-228H13.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1566-1572
0.025
1
7mer
114-131
0.011
1
6mer
1883-1888
0.004
1
7mer
766-792
0.003
0
STXBP5-AS1
hsa-miR-654-3p
0.879
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000606831
Biotype: antisense
Gene id: ENSG00000233452
Gene Name: STXBP5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1873-1887
0.040
1
6mer
1447-1466
0.003
0
XLOC_013010
hsa-miR-654-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026952
Biotype: transcript isomorph
Gene id: XLOC_013010
Gene Name: XLOC_013010
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
104-113
0.016
0
6mer
104-122
0.014
0
6mer
456-481
0.012
0
TTTY15
hsa-miR-654-3p
0.878
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: NR_001545.2
Biotype: lincRNA
Gene id: NR_001545.2 (gene)
Gene Name: TTTY15
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1896-1916
0.018
0
6mer
4844-4856
0.013
0
6mer
4441-4457
0.006
0
6mer
2272-2283
0.006
0
RP11-1260E13.4
hsa-miR-654-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575743
Biotype: retained_intron
Gene id: ENSG00000262061
Gene Name: RP11-1260E13.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1865-1885
0.014
0
8mer
1989-2009
0.013
0
8mer
1927-1947
0.012
0
7mer
1380-1391
0.003
0
RP4-622L5.2
hsa-miR-654-3p
0.877
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000515055
Biotype: sense_intronic
Gene id: ENSG00000250135
Gene Name: RP4-622L5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
500-517
0.043
5
LINC00943
hsa-miR-654-3p
0.876
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535544
Biotype: lincRNA
Gene id: ENSG00000189238
Gene Name: LINC00943
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2364-2382
0.034
1
7mer
783-791
0.009
2
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