LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_008332
hsa-miR-654-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: chrY
Transcript: TCONS_00017595
Biotype: transcript isomorph
Gene id: XLOC_008332
Gene Name: XLOC_008332
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
879-893
0.012
0
6mer
1022-1045
0.011
0
6mer
377-389
0.009
0
6mer
594-610
0.009
0
6mer
1095-1119
0.004
Not Conserved
6mer
808-822
0.002
Not Conserved
TTTY4
hsa-miR-654-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000436568
Biotype: lincRNA
Gene id: ENSG00000226906
Gene Name: TTTY4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
453-467
0.012
0
6mer
301-324
0.011
0
6mer
957-969
0.009
0
6mer
736-752
0.009
0
6mer
227-251
0.004
Not Conserved
6mer
524-538
0.002
Not Conserved
TTTY4B
hsa-miR-654-3p
0.900
mTTBlnEmP

Gene Details
Chromosome: Y
Transcript: ENST00000420149
Biotype: lincRNA
Gene id: ENSG00000235412
Gene Name: TTTY4B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
453-467
0.012
0
6mer
301-324
0.010
0
6mer
957-969
0.009
0
6mer
736-752
0.009
0
6mer
227-251
0.004
Not Conserved
6mer
524-538
0.002
Not Conserved
DLX6-AS1
hsa-miR-654-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000430027
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
483-510
0.015
2
7mer
4713-4734
0.010
2
7mer
5909-5930
0.006
1
6mer
678-695
0.005
2
6mer
10410-10414
0.003
8
7mer
12955-12971
0.003
2
6mer
9147-9162
0.002
5
6mer
12680-12707
0.001
1
6mer
11687-11701
0.001
1
6mer
5791-5805
0.001
0
RP11-362F19.1
hsa-miR-654-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509161
Biotype: lincRNA
Gene id: ENSG00000248810
Gene Name: RP11-362F19.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2791-2800
0.020
1
7mer
2422-2439
0.015
Not Conserved
6mer
281-290
0.004
2
6mer
2147-2154
0.004
1
6mer
1129-1154
0.003
1
CTD-2161F6.2
hsa-miR-654-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506059
Biotype: lincRNA
Gene id: ENSG00000248311
Gene Name: CTD-2161F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-61
0.030
2
7mer
335-344
0.016
0
TTC28-AS1
hsa-miR-654-3p
0.899
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000428584
Biotype: antisense
Gene id: ENSG00000235954
Gene Name: TTC28-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5656-5670
0.041
1
6mer
318-328
0.003
0
6mer
3259-3286
0.002
1
XLOC_005501
hsa-miR-654-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012617
Biotype: transcript isomorph
Gene id: XLOC_005501
Gene Name: XLOC_005501
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1582-1603
0.046
1
MIR6818
hsa-miR-654-3p
0.898
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624945
Biotype: antisense
Gene id: ENSG00000279159
Gene Name: MIR6818
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44563-44574
0.010
7
8mer
5492-5498
0.010
0
7mer
32946-32951
0.005
1
7mer
4882-4896
0.004
0
6mer
29827-29850
0.002
2
7mer
34877-34896
0.002
1
6mer
27303-27324
0.002
1
6mer
20170-20176
0.002
2
6mer
6672-6689
0.002
2
6mer
1331-1353
0.002
1
6mer
38798-38820
0.002
1
6mer
7073-7087
0.001
1
7mer
5484-5498
0.001
0
6mer
2256-2272
0.001
0
6mer
9180-9193
0.001
Not Conserved
XLOC_012257
hsa-miR-654-3p
0.897
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025439
Biotype: transcript isomorph
Gene id: XLOC_012257
Gene Name: XLOC_012257
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
127-137
0.046
0
CTD-2081C10.7
hsa-miR-654-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606482
Biotype: lincRNA
Gene id: ENSG00000272416
Gene Name: CTD-2081C10.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
614-640
0.037
6
6mer
245-272
0.005
1
6mer
453-459
0.005
2
XLOC_010596
hsa-miR-654-3p
0.896
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021993
Biotype: transcript isomorph
Gene id: XLOC_010596
Gene Name: XLOC_010596
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Kidney Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-269
0.046
1
RP11-594N15.2
hsa-miR-654-3p
0.894
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000522807
Biotype: lincRNA
Gene id: ENSG00000254266
Gene Name: RP11-594N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
234-249
0.024
0
7mer
118-133
0.021
2
RP11-111F5.4
hsa-miR-654-3p
0.893
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000377518
Biotype: retained_intron
Gene id: ENSG00000204802
Gene Name: RP11-111F5.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
116-137
0.045
0
XLOC_002712
hsa-miR-654-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006100
Biotype: transcript isomorph
Gene id: XLOC_002712
Gene Name: XLOC_002712
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
197-221
0.045
0
NPSR1-AS1
hsa-miR-654-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000358772
Biotype: antisense
Gene id: ENSG00000197085
Gene Name: NPSR1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
507-531
0.045
1
RP11-143N13.2
hsa-miR-654-3p
0.892
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000562852
Biotype: lincRNA
Gene id: ENSG00000260201
Gene Name: RP11-143N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
595-601
0.041
1
6mer
636-655
0.004
1
RP11-227G15.3
hsa-miR-654-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000578389
Biotype: processed_transcript
Gene id: ENSG00000265794
Gene Name: RP11-227G15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-278
0.040
5
6mer
302-323
0.005
5
KIAA0087
hsa-miR-654-3p
0.891
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_022006.1
Biotype: sense
Gene id: NR_022006.1 (gene)
Gene Name: KIAA0087
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2949-2957
0.016
5
7mer
2597-2615
0.015
6
7mer
436-448
0.010
1
6mer
3648-3664
0.002
1
6mer
1642-1651
0.002
1
LOC100129617
hsa-miR-654-3p
0.890
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: NR_045112.1
Biotype: sense
Gene id: NR_045112.1 (gene)
Gene Name: LOC100129617
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
432-447
0.031
3
7mer
1731-1747
0.012
0
6mer
933-958
0.002
1
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