LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-217E22.5
hsa-miR-654-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000463297
Biotype: lincRNA
Gene id: ENSG00000243486
Gene Name: RP11-217E22.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
191-199
0.051
2
RP11-422J15.1
hsa-miR-654-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000513875
Biotype: lincRNA
Gene id: ENSG00000249618
Gene Name: RP11-422J15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1303-1324
0.028
1
8mer
526-541
0.016
1
6mer
1596-1600
0.007
1
XLOC_009659
hsa-miR-654-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020330
Biotype: transcript isomorph
Gene id: XLOC_009659
Gene Name: XLOC_009659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
172-189
0.028
1
7mer
24-30
0.023
0
AC012594.1
hsa-miR-654-3p
0.921
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000595528
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
210-231
0.051
2
FAM66C
hsa-miR-654-3p
0.919
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000544214
Biotype: antisense
Gene id: ENSG00000226711
Gene Name: FAM66C
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1340-1363
0.040
1
7mer
1546-1571
0.011
0
LINC00965
hsa-miR-654-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027000.1
Biotype: lincRNA
Gene id: NR_027000.1 (gene)
Gene Name: LINC00965
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2605-2610
0.036
0
7mer
2546-2564
0.006
Not Conserved
7mer
884-908
0.004
Not Conserved
6mer
325-343
0.002
Not Conserved
7mer
1360-1384
0.002
Not Conserved
CTD-2184D3.5
hsa-miR-654-3p
0.918
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000558607
Biotype: antisense
Gene id: ENSG00000259712
Gene Name: CTD-2184D3.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
500-524
0.041
2
6mer
258-283
0.009
2
RP11-15H20.6
hsa-miR-654-3p
0.917
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598386
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-316
0.043
1
6mer
363-378
0.007
0
XLOC_005214
hsa-miR-654-3p
0.915
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011750
Biotype: transcript isomorph
Gene id: XLOC_005214
Gene Name: XLOC_005214
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
235-255
0.009
1
7mer
1099-1123
0.008
1
7mer
1592-1605
0.008
0
7mer
685-698
0.007
0
6mer
2037-2058
0.006
1
6mer
1863-1868
0.005
0
6mer
349-370
0.005
0
AC006548.28
hsa-miR-654-3p
0.914
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623130
Biotype: sense_overlapping
Gene id: ENSG00000280156
Gene Name: AC006548.28
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73244-73262
0.005
1
7mer
37781-37792
0.004
Not Conserved
7mer
72304-72324
0.004
0
8mer
39495-39520
0.004
1
7mer
16978-16988
0.003
1
7mer
32711-32717
0.003
1
6mer
44631-44656
0.002
0
6mer
65131-65141
0.002
0
6mer
64261-64283
0.002
1
6mer
58771-58793
0.002
1
6mer
32289-32304
0.002
1
6mer
35413-35434
0.002
1
6mer
1115-1136
0.002
1
6mer
59137-59154
0.002
1
6mer
60101-60115
0.002
1
6mer
50060-50074
0.002
Not Conserved
6mer
48493-48502
0.001
Not Conserved
6mer
23380-23402
0.001
1
6mer
47351-47363
0.001
Not Conserved
8mer+wobble
78886-78907
0.001
Not Conserved
6mer
21573-21591
0.001
0
7mer
42200-42222
0.001
0
6mer
42275-42295
0.001
0
RP11-143N13.2
hsa-miR-654-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565300
Biotype: lincRNA
Gene id: ENSG00000260201
Gene Name: RP11-143N13.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
301-307
0.044
1
6mer
342-361
0.005
1
RP11-622C24.2
hsa-miR-654-3p
0.913
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000617013
Biotype: lincRNA
Gene id: ENSG00000277152
Gene Name: RP11-622C24.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-51
0.020
0
7mer
80-91
0.014
0
8mer
4069-4089
0.005
Not Conserved
7mer
2032-2056
0.004
0
6mer
2280-2300
0.002
1
6mer
3589-3615
0.001
2
6mer
1257-1278
0.001
Not Conserved
7mer
2102-2126
0.001
0
XLOC_004144
hsa-miR-654-3p
0.912
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00008639
Biotype: transcript isomorph
Gene id: XLOC_004144
Gene Name: XLOC_004144
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
799-807
0.019
1
7mer
3778-3787
0.016
5
7mer
2917-2936
0.008
2
6mer
1143-1169
0.003
4
6mer
3330-3346
0.002
1
6mer
2462-2485
0.001
0
RP11-794M8.1
hsa-miR-654-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000589601
Biotype: antisense
Gene id: ENSG00000267239
Gene Name: RP11-794M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-48
0.049
2
RP11-253A20.1
hsa-miR-654-3p
0.911
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000424246
Biotype: antisense
Gene id: ENSG00000238140
Gene Name: RP11-253A20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
601-617
0.044
1
6mer
243-261
0.004
1
XLOC_005319
hsa-miR-654-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011831
Biotype: transcript isomorph
Gene id: XLOC_005319
Gene Name: XLOC_005319
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
360-379
0.022
1
7mer
208-225
0.019
2
6mer
105-121
0.007
1
RP11-244B22.6
hsa-miR-654-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564059
Biotype: lincRNA
Gene id: ENSG00000261398
Gene Name: RP11-244B22.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
490-517
0.036
0
6mer
105-130
0.013
0
XLOC_008577
hsa-miR-654-3p
0.910
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018301
Biotype: transcript isomorph
Gene id: XLOC_008577
Gene Name: XLOC_008577
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Breast Normal/Primary
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
17-37
0.049
8
AC012594.1
hsa-miR-654-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000597915
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
264-285
0.048
2
LINC00960
hsa-miR-654-3p
0.909
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000492922
Biotype: lincRNA
Gene id: ENSG00000242516
Gene Name: LINC00960
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
221-247
0.038
1
6mer
1567-1585
0.010
1
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