LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-713N11.6
hsa-miR-654-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000622162
Biotype: antisense
Gene id: ENSG00000276842
Gene Name: RP11-713N11.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
590-608
0.054
2
LINC01224
hsa-miR-654-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598922
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
69-83
0.054
1
LINC00571
hsa-miR-654-3p
0.935
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000454060
Biotype: lincRNA
Gene id: ENSG00000223685
Gene Name: LINC00571
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
357-374
0.031
1
7mer
448-474
0.023
1
XLOC_007089
hsa-miR-654-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00015015
Biotype: transcript isomorph
Gene id: XLOC_007089
Gene Name: XLOC_007089
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1864-1883
0.018
0
8mer
7752-7767
0.009
0
8mer
7249-7271
0.006
Not Conserved
7mer
10326-10343
0.006
0
7mer
4571-4592
0.004
0
7mer
11059-11075
0.004
Not Conserved
7mer
595-620
0.004
Not Conserved
6mer
9344-9349
0.003
0
6mer
10295-10312
0.000
Not Conserved
RP11-613D13.8
hsa-miR-654-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501541
Biotype: lincRNA
Gene id: ENSG00000244953
Gene Name: RP11-613D13.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
42-58
0.049
4
6mer
738-756
0.003
1
7mer
686-698
0.002
0
RP4-677H15.4
hsa-miR-654-3p
0.934
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000422107
Biotype: antisense
Gene id: ENSG00000228988
Gene Name: RP4-677H15.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
166-172
0.054
2
LINC00898
hsa-miR-654-3p
0.933
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000380990
Biotype: lincRNA
Gene id: ENSG00000205634
Gene Name: LINC00898
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
54-81
0.051
0
6mer
1226-1251
0.002
0
6mer
2999-3026
0.001
0
AC012594.1
hsa-miR-654-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593861
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
41-62
0.053
2
RP11-318C2.1
hsa-miR-654-3p
0.931
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000533843
Biotype: antisense
Gene id: ENSG00000255159
Gene Name: RP11-318C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
307-333
0.053
6
XLOC_009650
hsa-miR-654-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021051
Biotype: transcript isomorph
Gene id: XLOC_009650
Gene Name: XLOC_009650
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
136-158
0.053
1
SEPSECS-AS1
hsa-miR-654-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: NR_037934.1
Biotype: sense
Gene id: NR_037934.1 (gene)
Gene Name: SEPSECS-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
650-670
0.053
1
RP11-318C2.1
hsa-miR-654-3p
0.930
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000527725
Biotype: antisense
Gene id: ENSG00000255159
Gene Name: RP11-318C2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
277-304
0.053
6
AC068039.4
hsa-miR-654-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000416361
Biotype: antisense
Gene id: ENSG00000228389
Gene Name: AC068039.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1384-1409
0.026
0
6mer
169-186
0.015
0
6mer
316-326
0.012
0
XLOC_005164
hsa-miR-654-3p
0.929
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011688
Biotype: transcript isomorph
Gene id: XLOC_005164
Gene Name: XLOC_005164
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3842-3857
0.024
0
7mer
194-203
0.021
1
7mer
3876-3902
0.007
1
LINC00664
hsa-miR-654-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596203
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
87-102
0.014
1
6mer
232-247
0.010
1
6mer
1623-1628
0.009
0
6mer
447-462
0.009
1
6mer
382-394
0.005
0
6mer
591-600
0.005
0
MAMDC2-AS1
hsa-miR-654-3p
0.928
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000414515
Biotype: antisense
Gene id: ENSG00000204706
Gene Name: MAMDC2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
846-871
0.043
2
7mer
1558-1571
0.009
1
AC012594.1
hsa-miR-654-3p
0.926
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000594762
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
93-114
0.052
2
AC012594.1
hsa-miR-654-3p
0.923
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000593578
Biotype: antisense
Gene id: ENSG00000231898
Gene Name: AC012594.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
179-200
0.051
2
RP11-46H11.3
hsa-miR-654-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000503695
Biotype: lincRNA
Gene id: ENSG00000250790
Gene Name: RP11-46H11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
129-140
0.043
0
6mer
425-448
0.008
0
XLOC_006486
hsa-miR-654-3p
0.922
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00013856
Biotype: transcript isomorph
Gene id: XLOC_006486
Gene Name: XLOC_006486
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
376-382
0.040
0
7mer
1261-1281
0.006
0
6mer
609-620
0.005
3
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