LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
LINC00664
hsa-miR-654-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599078
Biotype: lincRNA
Gene id: ENSG00000268658
Gene Name: LINC00664
UCSC graphic:
Expression:
  Cell Line Tissue Category
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3046-3070
0.021
1
6mer
3296-3310
0.009
1
6mer
3705-3721
0.005
Not Conserved
6mer
1399-1414
0.004
1
6mer
303-320
0.003
Not Conserved
6mer
878-893
0.003
0
6mer
1681-1696
0.003
1
6mer
409-427
0.003
Not Conserved
6mer
661-677
0.003
Not Conserved
6mer
737-753
0.002
0
6mer
1164-1180
0.002
0
6mer
1025-1040
0.002
Not Conserved
6mer
1455-1471
0.001
0
RP11-73B2.2
hsa-miR-654-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000425228
Biotype: lincRNA
Gene id: ENSG00000230600
Gene Name: RP11-73B2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
218-228
0.059
0
RP4-568C11.4
hsa-miR-654-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000620459
Biotype: lincRNA
Gene id: ENSG00000274173
Gene Name: RP4-568C11.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
900-924
0.040
0
6mer
1076-1099
0.018
0
RP11-15H20.6
hsa-miR-654-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594766
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-333
0.046
1
6mer
380-395
0.007
0
6mer
197-213
0.006
0
RP11-380D11.2
hsa-miR-654-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000565259
Biotype: lincRNA
Gene id: ENSG00000260926
Gene Name: RP11-380D11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49-62
0.058
1
RP11-336A10.4
hsa-miR-654-3p
0.948
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000427341
Biotype: lincRNA
Gene id: ENSG00000228951
Gene Name: RP11-336A10.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
44-67
0.058
6
RP11-902B17.1
hsa-miR-654-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000500036
Biotype: antisense
Gene id: ENSG00000247287
Gene Name: RP11-902B17.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
815-821
0.025
1
7mer
379-402
0.014
0
7mer
895-918
0.006
Not Conserved
6mer
151-171
0.003
0
6mer
3557-3568
0.002
0
6mer
1482-1498
0.002
0
6mer
2821-2845
0.002
0
6mer
3043-3065
0.002
1
6mer
1925-1935
0.002
1
CTC-459F4.3
hsa-miR-654-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588784
Biotype: lincRNA
Gene id: ENSG00000267575
Gene Name: CTC-459F4.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2229-2250
0.037
0
6mer
2208-2226
0.011
0
6mer
920-938
0.010
0
RP11-968A15.2
hsa-miR-654-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000547177
Biotype: antisense
Gene id: ENSG00000257596
Gene Name: RP11-968A15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
19-37
0.036
9
6mer
38-50
0.012
7
6mer
193-212
0.010
7
CTD-2532K18.2
hsa-miR-654-3p
0.946
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510150
Biotype: lincRNA
Gene id: ENSG00000251144
Gene Name: CTD-2532K18.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
79-88
0.057
1
LL22NC03-22D1.1
hsa-miR-654-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624601
Biotype: lincRNA
Gene id: ENSG00000279003
Gene Name: LL22NC03-22D1.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
20533-20550
0.014
1
8mer
24987-24996
0.012
1
7mer
16361-16384
0.009
1
7mer
24024-24046
0.004
1
8mer
1795-1820
0.004
Not Conserved
7mer
15581-15597
0.003
0
6mer
7401-7416
0.003
2
6mer
4872-4884
0.002
2
6mer
8197-8220
0.002
0
6mer
17199-17224
0.001
1
6mer
2152-2168
0.001
1
7mer
24029-24054
0.001
0
6mer
5041-5061
0.001
2
6mer
1821-1846
0.001
Not Conserved
RP11-693J15.5
hsa-miR-654-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000504409
Biotype: lincRNA
Gene id: ENSG00000205056
Gene Name: RP11-693J15.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
10435-10460
0.033
1
7mer
10466-10474
0.015
1
7mer
1536-1555
0.005
1
6mer
951-970
0.002
1
6mer
4494-4507
0.002
1
CTA-221G9.11
hsa-miR-654-3p
0.945
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623422
Biotype: lincRNA
Gene id: ENSG00000279298
Gene Name: CTA-221G9.11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
332-352
0.036
0
6mer
568-588
0.015
0
7mer
50-60
0.006
Not Conserved
RP11-15H20.6
hsa-miR-654-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598599
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
193-217
0.044
1
6mer
264-279
0.007
0
6mer
81-97
0.006
0
RP11-354M20.3
hsa-miR-654-3p
0.944
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000417968
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
705-720
0.021
0
7mer
478-500
0.018
10
7mer
594-620
0.009
4
7mer
467-477
0.008
1
FAM66E
hsa-miR-654-3p
0.942
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000533615
Biotype: lincRNA
Gene id: ENSG00000225725
Gene Name: FAM66E
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1923-1946
0.051
1
6mer
840-859
0.005
1
LINC00907
hsa-miR-654-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000593234
Biotype: lincRNA
Gene id: ENSG00000267586
Gene Name: LINC00907
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3270-3288
0.053
1
6mer
2208-2235
0.003
1
RP11-143A12.3
hsa-miR-654-3p
0.940
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506655
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
174-195
0.034
0
8mer
2560-2586
0.014
0
7mer
2270-2297
0.004
Not Conserved
6mer
2330-2356
0.003
0
HIPK1-AS1
hsa-miR-654-3p
0.939
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000426237
Biotype: retained_intron
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
149-171
0.055
1
LINC00571
hsa-miR-654-3p
0.936
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000451826
Biotype: lincRNA
Gene id: ENSG00000223685
Gene Name: LINC00571
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
135-152
0.034
1
7mer
226-252
0.021
1
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