LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
CTD-3080P12.3
hsa-miR-654-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512572
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-398
0.025
1
LINC00293
hsa-miR-654-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_027012.1
Biotype: lincRNA
Gene id: NR_027012.1 (gene)
Gene Name: LINC00293
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
750-767
0.007
1
6mer
1525-1539
0.005
0
6mer
701-718
0.005
0
6mer
1306-1323
0.004
0
6mer
1090-1106
0.004
0
CFLAR-AS1
hsa-miR-654-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000601974
Biotype: antisense
Gene id: ENSG00000226312
Gene Name: CFLAR-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
73-94
0.025
5
XLOC_012389
hsa-miR-654-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025560
Biotype: transcript isomorph
Gene id: XLOC_012389
Gene Name: XLOC_012389
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1127-1145
0.021
1
6mer
527-545
0.004
1
RP11-568A7.3
hsa-miR-654-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000454185
Biotype: lincRNA
Gene id: ENSG00000231720
Gene Name: RP11-568A7.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
478-484
0.020
Not Conserved
6mer
41-62
0.005
Not Conserved
AC090627.1
hsa-miR-654-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000421610
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
120-128
0.025
7
RP11-321F6.2
hsa-miR-654-3p
0.705
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000612806
Biotype: sense_intronic
Gene id: ENSG00000274995
Gene Name: RP11-321F6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-586
0.025
6
XLOC_008522
hsa-miR-654-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018246
Biotype: transcript isomorph
Gene id: XLOC_008522
Gene Name: XLOC_008522
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
153-165
0.021
0
6mer
301-309
0.004
1
FLJ42393
hsa-miR-654-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_024413.1
Biotype: sense
Gene id: NR_024413.1 (gene)
Gene Name: FLJ42393
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
237-260
0.025
4
LINC00906
hsa-miR-654-3p
0.704
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000588609
Biotype: lincRNA
Gene id: ENSG00000267339
Gene Name: LINC00906
UCSC graphic:
Expression:
  Cell Line Tissue Category
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
250-275
0.021
1
6mer
220-246
0.004
1
LINC01014
hsa-miR-654-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000441018
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
95-112
0.025
1
RP11-143J12.3
hsa-miR-654-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000579467
Biotype: antisense
Gene id: ENSG00000263847
Gene Name: RP11-143J12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
22-27
0.025
1
XLOC_002746
hsa-miR-654-3p
0.703
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006143
Biotype: transcript isomorph
Gene id: XLOC_002746
Gene Name: XLOC_002746
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8684-8698
0.015
1
7mer
5571-5596
0.008
2
6mer
7635-7655
0.002
1
XXyac-YX155B6.5
hsa-miR-654-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000595668
Biotype: lincRNA
Gene id: ENSG00000232265
Gene Name: XXyac-YX155B6.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
766-776
0.025
0
LOC101929625
hsa-miR-654-3p
0.702
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_109880.1
Biotype: lincRNA
Gene id: NR_109880.1 (gene)
Gene Name: LOC101929625
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
345-364
0.025
1
RP11-36B6.1
hsa-miR-654-3p
0.701
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000604514
Biotype: lincRNA
Gene id: ENSG00000271522
Gene Name: RP11-36B6.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
98-103
0.025
1
XLOC_001966
hsa-miR-654-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004118
Biotype: transcript isomorph
Gene id: XLOC_001966
Gene Name: XLOC_001966
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Breast Normal/Primary
- Heart Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
610-622
0.015
1
6mer
61-65
0.010
3
LOC401324
hsa-miR-654-3p
0.700
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: NR_038864.1
Biotype: lincRNA
Gene id: NR_038864.1 (gene)
Gene Name: LOC401324
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
727-735
0.025
1
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