LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-281P23.1
hsa-miR-654-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000515343
Biotype: lincRNA
Gene id: ENSG00000251152
Gene Name: RP11-281P23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2237-2250
0.010
2
7mer
3159-3167
0.006
0
6mer
384-392
0.005
1
6mer
3518-3528
0.003
1
6mer
2856-2875
0.002
1
GABPB1-AS1
hsa-miR-654-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000499624
Biotype: antisense
Gene id: ENSG00000244879
Gene Name: GABPB1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
15845-15861
0.006
1
7mer
8610-8615
0.006
1
7mer
3989-3998
0.004
0
7mer
7628-7645
0.003
0
7mer
11990-12003
0.003
1
6mer
11761-11768
0.002
1
6mer
4928-4935
0.002
0
MIR4500HG
hsa-miR-654-3p
0.710
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000441617
Biotype: lincRNA
Gene id: ENSG00000228824
Gene Name: MIR4500HG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Kidney Normal/Primary
- Liver Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
184-204
0.025
0
TPT1-AS1
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000517509
Biotype: antisense
Gene id: ENSG00000170919
Gene Name: TPT1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HREpiC Kidney Normal/Primary
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1902-1920
0.023
2
6mer
998-1006
0.002
Not Conserved
XLOC_010202
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00020925
Biotype: transcript isomorph
Gene id: XLOC_010202
Gene Name: XLOC_010202
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
640-660
0.012
Not Conserved
7mer
449-464
0.009
1
6mer
928-946
0.003
1
LINC01315
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000424852
Biotype: lincRNA
Gene id: ENSG00000229891
Gene Name: LINC01315
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
386-411
0.017
6
6mer
113-139
0.008
4
XLOC_008539
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018257
Biotype: transcript isomorph
Gene id: XLOC_008539
Gene Name: XLOC_008539
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
302-323
0.018
0
6mer
33-48
0.007
2
CTC-304I17.4
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000580658
Biotype: sense_intronic
Gene id: ENSG00000263485
Gene Name: CTC-304I17.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
104-122
0.025
1
CTD-2019O4.1
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000530837
Biotype: lincRNA
Gene id: ENSG00000254820
Gene Name: CTD-2019O4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
189-203
0.016
0
7mer
321-340
0.009
0
XLOC_008747
hsa-miR-654-3p
0.709
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018450
Biotype: transcript isomorph
Gene id: XLOC_008747
Gene Name: XLOC_008747
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-156
0.019
1
7mer
478-500
0.005
0
6mer
2272-2287
0.002
1
RP11-701H24.3
hsa-miR-654-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000546615
Biotype: lincRNA
Gene id: ENSG00000257647
Gene Name: RP11-701H24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
320-332
0.025
2
LINC01013
hsa-miR-654-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000436112
Biotype: lincRNA
Gene id: ENSG00000228495
Gene Name: LINC01013
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
481-491
0.021
1
6mer
129-139
0.004
0
XLOC_002585
hsa-miR-654-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006792
Biotype: transcript isomorph
Gene id: XLOC_002585
Gene Name: XLOC_002585
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
HepG2 Liver Cancer/Malignant
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
408-435
0.016
1
6mer
124-132
0.007
2
6mer
1398-1406
0.002
0
6mer
1604-1615
0.001
1
EDRF1-AS1
hsa-miR-654-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000612420
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
165-177
0.025
4
MAPKAPK5-AS1
hsa-miR-654-3p
0.708
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000456429
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
246-266
0.017
Not Conserved
6mer
1789-1806
0.005
1
6mer
504-522
0.003
1
RP11-269F20.1
hsa-miR-654-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439849
Biotype: antisense
Gene id: ENSG00000236031
Gene Name: RP11-269F20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
173-182
0.025
1
RP11-57G10.8
hsa-miR-654-3p
0.707
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610279
Biotype: lincRNA
Gene id: ENSG00000272892
Gene Name: RP11-57G10.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
664-688
0.025
1
RP11-164N3.3
hsa-miR-654-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528458
Biotype: antisense
Gene id: ENSG00000255241
Gene Name: RP11-164N3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
191-206
0.025
1
CTC-498M16.2
hsa-miR-654-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000506041
Biotype: lincRNA
Gene id: ENSG00000250156
Gene Name: CTC-498M16.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1566-1589
0.020
1
6mer
307-324
0.005
3
RP11-105N14.3
hsa-miR-654-3p
0.706
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000426870
Biotype: lincRNA
Gene id: ENSG00000236193
Gene Name: RP11-105N14.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
494-517
0.025
3
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