LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
EDRF1-AS1
hsa-miR-654-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000610534
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-210
0.026
4
RP13-753N3.1
hsa-miR-654-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000584157
Biotype: antisense
Gene id: ENSG00000263531
Gene Name: RP13-753N3.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
754-780
0.015
0
6mer
580-594
0.011
0
CTD-2291D10.3
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000599269
Biotype: lincRNA
Gene id: ENSG00000269543
Gene Name: CTD-2291D10.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
179-194
0.013
0
6mer
108-125
0.012
0
LINC00886
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000473352
Biotype: lincRNA
Gene id: ENSG00000240875
Gene Name: LINC00886
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
72-78
0.020
1
6mer
130-147
0.006
3
RP11-23J9.4
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000529787
Biotype: processed_transcript
Gene id: ENSG00000255036
Gene Name: RP11-23J9.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
378-402
0.022
9
6mer
3124-3147
0.003
3
6mer
1786-1796
0.001
Not Conserved
AC090627.1
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000621191
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
128-136
0.026
7
RP11-436I24.1
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_027114.2
Biotype: antisense
Gene id: NR_027114.2 (gene)
Gene Name: RP11-436I24.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
977-1002
0.012
3
7mer
1220-1238
0.007
1
6mer
164-177
0.007
2
CTB-118N6.2
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000508766
Biotype: lincRNA
Gene id: ENSG00000249167
Gene Name: CTB-118N6.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
448-465
0.026
0
RP11-328K22.1
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000413564
Biotype: antisense
Gene id: ENSG00000224500
Gene Name: RP11-328K22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
314-323
0.026
5
RP11-48B3.3
hsa-miR-654-3p
0.714
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000523871
Biotype: lincRNA
Gene id: ENSG00000254162
Gene Name: RP11-48B3.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
857-873
0.026
2
XLOC_012779
hsa-miR-654-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026201
Biotype: transcript isomorph
Gene id: XLOC_012779
Gene Name: XLOC_012779
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
364-390
0.026
1
XLOC_011576
hsa-miR-654-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr15
Transcript: TCONS_00023206
Biotype: transcript isomorph
Gene id: XLOC_011576
Gene Name: XLOC_011576
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
138-165
0.016
1
7mer
1163-1175
0.010
0
XLOC_008666
hsa-miR-654-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00017891
Biotype: transcript isomorph
Gene id: XLOC_008666
Gene Name: XLOC_008666
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1017-1030
0.025
1
6mer
1055-1073
0.001
0
LINC00327
hsa-miR-654-3p
0.713
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000443778
Biotype: lincRNA
Gene id: ENSG00000232977
Gene Name: LINC00327
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
567-586
0.017
4
7mer
1412-1418
0.009
1
XLOC_002749
hsa-miR-654-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006148
Biotype: transcript isomorph
Gene id: XLOC_002749
Gene Name: XLOC_002749
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Breast Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2292-2318
0.014
1
9mer
1057-1083
0.008
1
6mer
2748-2762
0.003
0
RP11-346D14.1
hsa-miR-654-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000561320
Biotype: lincRNA
Gene id: ENSG00000259380
Gene Name: RP11-346D14.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
88-105
0.022
Not Conserved
6mer
608-623
0.003
0
LINC00469
hsa-miR-654-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000544677
Biotype: lincRNA
Gene id: ENSG00000177338
Gene Name: LINC00469
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
346-372
0.025
1
XLOC_006794
hsa-miR-654-3p
0.712
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014698
Biotype: transcript isomorph
Gene id: XLOC_006794
Gene Name: XLOC_006794
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
456-480
0.025
1
LINC01317
hsa-miR-654-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000442026
Biotype: lincRNA
Gene id: ENSG00000203386
Gene Name: LINC01317
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
432-459
0.025
5
RP11-794M8.1
hsa-miR-654-3p
0.711
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000586278
Biotype: antisense
Gene id: ENSG00000267239
Gene Name: RP11-794M8.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
373-399
0.025
1
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