LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_005101
hsa-miR-654-3p
0.969
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010578
Biotype: transcript isomorph
Gene id: XLOC_005101
Gene Name: XLOC_005101
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
37-48
0.059
1
6mer
141-156
0.008
0
AC003973.4
hsa-miR-654-3p
0.967
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596778
Biotype: lincRNA
Gene id: ENSG00000269504
Gene Name: AC003973.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1265-1281
0.014
0
6mer
1035-1050
0.013
0
6mer
1229-1244
0.012
0
6mer
986-999
0.011
0
6mer
830-847
0.007
0
6mer
728-744
0.006
0
6mer
910-928
0.003
Not Conserved
CTD-3080P12.3
hsa-miR-654-3p
0.963
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000505972
Biotype: antisense
Gene id: ENSG00000249201
Gene Name: CTD-3080P12.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
110-120
0.064
1
CTD-2291D10.2
hsa-miR-654-3p
0.962
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000565584
Biotype: lincRNA
Gene id: ENSG00000261558
Gene Name: CTD-2291D10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
501-516
0.037
0
6mer
255-271
0.010
0
6mer
452-471
0.007
0
6mer
942-957
0.004
Not Conserved
6mer
868-883
0.003
Not Conserved
6mer
666-675
0.002
Not Conserved
AC004076.5
hsa-miR-654-3p
0.961
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000620532
Biotype: antisense
Gene id: ENSG00000276449
Gene Name: AC004076.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2865-2888
0.033
0
7mer
73-90
0.011
0
8mer
838-857
0.009
0
6mer
3105-3125
0.003
0
6mer
2360-2385
0.003
1
6mer
3004-3021
0.003
0
XLOC_012999
hsa-miR-654-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027503
Biotype: transcript isomorph
Gene id: XLOC_012999
Gene Name: XLOC_012999
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
101-113
0.062
0
RP11-166B2.3
hsa-miR-654-3p
0.959
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000568144
Biotype: sense_intronic
Gene id: ENSG00000261560
Gene Name: RP11-166B2.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
313-333
0.025
1
7mer
1372-1388
0.019
0
7mer
128-142
0.017
1
RP11-354M20.3
hsa-miR-654-3p
0.958
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000614094
Biotype: antisense
Gene id: ENSG00000231104
Gene Name: RP11-354M20.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
312-334
0.024
10
7mer
539-554
0.021
0
7mer
428-454
0.009
4
7mer
301-311
0.008
1
CTD-2017D11.1
hsa-miR-654-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000594934
Biotype: lincRNA
Gene id: ENSG00000268362
Gene Name: CTD-2017D11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
383-396
0.013
1
6mer
753-777
0.011
1
6mer
1354-1370
0.009
1
6mer
1426-1441
0.008
1
6mer
843-859
0.006
1
6mer
415-432
0.005
0
6mer
996-1008
0.004
0
6mer
1210-1227
0.004
0
XLOC_013274
hsa-miR-654-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00027238
Biotype: transcript isomorph
Gene id: XLOC_013274
Gene Name: XLOC_013274
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1364-1373
0.011
1
7mer
2923-2947
0.009
1
6mer
3271-3286
0.005
1
6mer
3476-3490
0.005
1
6mer
5134-5150
0.005
1
6mer
3065-3081
0.004
1
6mer
5426-5441
0.004
0
6mer
1440-1454
0.003
1
6mer
1516-1529
0.003
0
6mer
4995-5003
0.002
0
6mer
2572-2588
0.002
0
6mer
5720-5736
0.002
Not Conserved
6mer
2780-2801
0.002
0
6mer
1293-1308
0.002
0
6mer
2994-3009
0.001
0
6mer
2502-2518
0.001
0
XLOC_004517
hsa-miR-654-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00010065
Biotype: transcript isomorph
Gene id: XLOC_004517
Gene Name: XLOC_004517
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
94-113
0.047
1
7mer
698-716
0.008
0
6mer
1888-1907
0.006
2
XLOC_002900
hsa-miR-654-3p
0.957
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006294
Biotype: transcript isomorph
Gene id: XLOC_002900
Gene Name: XLOC_002900
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2847-2858
0.038
1
7mer
591-614
0.014
1
8mer
351-358
0.009
1
RP11-15H20.6
hsa-miR-654-3p
0.954
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596561
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
303-327
0.046
1
6mer
160-181
0.008
0
6mer
374-389
0.007
0
RP5-1120P11.1
hsa-miR-654-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422059
Biotype: antisense
Gene id: ENSG00000237686
Gene Name: RP5-1120P11.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
316-333
0.049
2
8mer
1359-1368
0.008
1
6mer
1041-1061
0.002
1
RP11-15H20.6
hsa-miR-654-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598323
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
231-255
0.046
1
6mer
88-109
0.008
0
6mer
302-317
0.007
0
RP11-15H20.6
hsa-miR-654-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000598053
Biotype: lincRNA
Gene id: ENSG00000213971
Gene Name: RP11-15H20.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
214-238
0.047
1
6mer
285-300
0.006
0
6mer
102-118
0.006
0
XLOC_006459
hsa-miR-654-3p
0.953
mTTBlnEmP

Gene Details
Chromosome: chr7
Transcript: TCONS_00014308
Biotype: transcript isomorph
Gene id: XLOC_006459
Gene Name: XLOC_006459
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1494-1499
0.022
0
6mer
476-490
0.010
1
6mer
772-788
0.007
1
6mer
990-1005
0.005
0
6mer
702-717
0.004
0
6mer
931-948
0.004
0
6mer
540-556
0.004
0
6mer
919-943
0.003
0
LINC01224
hsa-miR-654-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000602077
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
124-138
0.045
1
6mer
53-67
0.015
1
TSIX
hsa-miR-654-3p
0.952
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000604411
Biotype: lincRNA
Gene id: ENSG00000270641
Gene Name: TSIX
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
24928-24943
0.007
1
8mer
35794-35811
0.006
2
7mer
22565-22583
0.006
3
7mer
36604-36626
0.005
0
7mer
5785-5799
0.005
Not Conserved
8mer
20517-20539
0.005
0
8mer
1869-1880
0.005
0
7mer
18906-18911
0.004
1
6mer
1202-1218
0.003
2
6mer
6265-6270
0.003
1
6mer
2886-2896
0.003
2
6mer
21322-21338
0.002
0
6mer
35525-35544
0.002
1
6mer
21445-21469
0.002
2
6mer
7527-7554
0.001
0
8mer+wobble
16366-16388
0.001
0
6mer
20534-20546
0.001
2
RP11-417L19.6
hsa-miR-654-3p
0.951
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000621809
Biotype: sense_intronic
Gene id: ENSG00000273568
Gene Name: RP11-417L19.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
198-224
0.059
1
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