LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_010116
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr12
Transcript: TCONS_00021342
Biotype: transcript isomorph
Gene id: XLOC_010116
Gene Name: XLOC_010116
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Kidney Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- White Blood Cell Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
635-660
0.014
4
7mer
935-959
0.007
1
6mer
813-830
0.005
2
RP11-881L2.1
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584109
Biotype: antisense
Gene id: ENSG00000266541
Gene Name: RP11-881L2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
430-452
0.022
2
6mer
406-425
0.004
1
CTD-2006C1.2
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000592187
Biotype: retained_intron
Gene id: ENSG00000219665
Gene Name: CTD-2006C1.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
392-417
0.022
0
6mer
3021-3036
0.004
0
XLOC_011102
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022831
Biotype: transcript isomorph
Gene id: XLOC_011102
Gene Name: XLOC_011102
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
339-358
0.012
3
7mer
1864-1888
0.006
1
7mer
298-323
0.005
0
6mer
1468-1482
0.002
1
RP11-1080G15.1
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: NR_038919.1
Biotype: lincRNA
Gene id: NR_038919.1 (gene)
Gene Name: RP11-1080G15.1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-512
0.026
1
XLOC_013690
hsa-miR-654-3p
0.719
mTTBlnEmP

Gene Details
Chromosome: chr20
Transcript: TCONS_00028641
Biotype: transcript isomorph
Gene id: XLOC_013690
Gene Name: XLOC_013690
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Placenta Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
892-904
0.026
2
AC015849.16
hsa-miR-654-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604907
Biotype: lincRNA
Gene id: ENSG00000270977
Gene Name: AC015849.16
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
620-636
0.010
1
7mer
5334-5360
0.009
1
7mer
299-316
0.007
1
SNHG14
hsa-miR-654-3p
0.718
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000551938
Biotype: antisense
Gene id: ENSG00000224078
Gene Name: SNHG14
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
297-316
0.017
1
6mer
459-469
0.005
1
6mer
134-149
0.004
0
VSTM2A-OT1
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000456049
Biotype: sense_overlapping
Gene id: ENSG00000224223
Gene Name: VSTM2A-OT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2939-2949
0.012
1
7mer
1977-1997
0.006
1
7mer
1226-1242
0.006
1
6mer
2284-2298
0.003
0
XLOC_005807
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012249
Biotype: transcript isomorph
Gene id: XLOC_005807
Gene Name: XLOC_005807
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
962-970
0.019
0
6mer
486-505
0.005
2
6mer
197-206
0.002
Not Conserved
LINC01312
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000456347
Biotype: lincRNA
Gene id: ENSG00000223586
Gene Name: LINC01312
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
133-143
0.018
1
7mer
382-403
0.008
1
XLOC_009111
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr11
Transcript: TCONS_00019278
Biotype: transcript isomorph
Gene id: XLOC_009111
Gene Name: XLOC_009111
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2-29
0.026
1
FAM226B
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000602508
Biotype: sense_intronic
Gene id: ENSG00000269911
Gene Name: FAM226B
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
8-31
0.026
2
XLOC_002903
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006302
Biotype: transcript isomorph
Gene id: XLOC_002903
Gene Name: XLOC_002903
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
186-202
0.019
0
6mer
228-252
0.007
0
EDRF1-AS1
hsa-miR-654-3p
0.717
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000593871
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
438-450
0.026
4
NEAT1
hsa-miR-654-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000501122
Biotype: lincRNA
Gene id: ENSG00000245532
Gene Name: NEAT1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
16552-16569
0.008
1
7mer
12541-12549
0.006
1
7mer
12155-12177
0.004
1
6mer
22524-22542
0.003
0
7mer
18147-18163
0.002
Not Conserved
6mer
1179-1201
0.002
3
6mer
15374-15394
0.001
1
6mer
15466-15486
0.001
2
RP11-475D12.2
hsa-miR-654-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000435367
Biotype: lincRNA
Gene id: ENSG00000224504
Gene Name: RP11-475D12.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2110-2120
0.019
1
6mer
33-48
0.007
2
RP11-563D10.1
hsa-miR-654-3p
0.716
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000454538
Biotype: lincRNA
Gene id: ENSG00000227240
Gene Name: RP11-563D10.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
619-644
0.014
1
6mer
174-195
0.007
2
6mer
411-417
0.004
1
MIR99AHG
hsa-miR-654-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000602339
Biotype: lincRNA
Gene id: ENSG00000215386
Gene Name: MIR99AHG
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
61-75
0.020
1
6mer
78-83
0.006
1
EDRF1-AS1
hsa-miR-654-3p
0.715
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000594025
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
224-236
0.026
4
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