LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
XLOC_012530
hsa-miR-654-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: chr17
Transcript: TCONS_00025702
Biotype: transcript isomorph
Gene id: XLOC_012530
Gene Name: XLOC_012530
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
GM12878 Blood Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
MCF7 Mammary Gland Cancer/Malignant
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
165-184
0.022
1
6mer
138-146
0.005
1
CTD-2292P10.4
hsa-miR-654-3p
0.726
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000520572
Biotype: antisense
Gene id: ENSG00000253741
Gene Name: CTD-2292P10.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
5376-5398
0.012
1
8mer
2429-2456
0.006
0
6mer
63-86
0.004
0
6mer
5224-5248
0.004
1
RP11-173P15.3
hsa-miR-654-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000541383
Biotype: antisense
Gene id: ENSG00000256364
Gene Name: RP11-173P15.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
527-535
0.013
1
6mer
307-326
0.007
6
6mer
97-119
0.007
3
XLOC_000633
hsa-miR-654-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00001335
Biotype: transcript isomorph
Gene id: XLOC_000633
Gene Name: XLOC_000633
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
- Liver Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
7276-7288
0.013
2
7mer
7166-7174
0.009
1
6mer
1235-1248
0.002
1
6mer
2226-2248
0.002
1
6mer
5786-5795
0.001
0
AC093063.3
hsa-miR-654-3p
0.725
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000456368
Biotype: lincRNA
Gene id: ENSG00000269460
Gene Name: AC093063.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
210-231
0.027
2
LINC01483
hsa-miR-654-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000433856
Biotype: lincRNA
Gene id: ENSG00000227517
Gene Name: LINC01483
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Placenta Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2271-2291
0.014
2
7mer
2515-2536
0.010
1
6mer
2531-2554
0.002
0
AC097724.3
hsa-miR-654-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000444501
Biotype: antisense
Gene id: ENSG00000226833
Gene Name: AC097724.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
600-617
0.019
3
6mer
161-176
0.008
1
XLOC_012622
hsa-miR-654-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr18
Transcript: TCONS_00026275
Biotype: transcript isomorph
Gene id: XLOC_012622
Gene Name: XLOC_012622
UCSC graphic: -
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
- Brain Normal/Primary
- Colon Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
559-565
0.025
2
6mer
1529-1548
0.002
2
XLOC_000892
hsa-miR-654-3p
0.724
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000018
Biotype: transcript isomorph
Gene id: XLOC_000892
Gene Name: XLOC_000892
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1342-1362
0.018
5
6mer
715-723
0.006
6
6mer
549-559
0.003
1
RP11-138A9.2
hsa-miR-654-3p
0.723
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000608412
Biotype: lincRNA
Gene id: ENSG00000273319
Gene Name: RP11-138A9.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2453-2459
0.012
3
6mer
3006-3032
0.005
1
6mer
2838-2851
0.004
1
6mer
601-609
0.004
0
RP11-672A2.6
hsa-miR-654-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000528781
Biotype: lincRNA
Gene id: ENSG00000255479
Gene Name: RP11-672A2.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
462-476
0.026
1
XLOC_000199
hsa-miR-654-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr1
Transcript: TCONS_00000200
Biotype: transcript isomorph
Gene id: XLOC_000199
Gene Name: XLOC_000199
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Liver Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
1588-1613
0.013
1
6mer
1655-1663
0.009
1
6mer
483-504
0.004
0
XLOC_004299
hsa-miR-654-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009877
Biotype: transcript isomorph
Gene id: XLOC_004299
Gene Name: XLOC_004299
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
21-35
0.026
1
RP11-715J22.6
hsa-miR-654-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000561847
Biotype: sense_intronic
Gene id: ENSG00000260293
Gene Name: RP11-715J22.6
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4806-4830
0.024
0
6mer
1565-1587
0.002
1
LOC100289495
hsa-miR-654-3p
0.722
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_040022.1
Biotype: lincRNA
Gene id: NR_040022.1 (gene)
Gene Name: LOC100289495
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
3673-3700
0.018
1
6mer
528-550
0.006
1
6mer
876-884
0.003
0
KB-431C1.4
hsa-miR-654-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000499653
Biotype: antisense
Gene id: ENSG00000246263
Gene Name: KB-431C1.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1330-1343
0.022
6
6mer
1088-1109
0.004
6
XLOC_010885
hsa-miR-654-3p
0.721
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022566
Biotype: transcript isomorph
Gene id: XLOC_010885
Gene Name: XLOC_010885
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
569-596
0.021
0
6mer
1267-1287
0.005
1
LINC01014
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000455307
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
152-169
0.024
1
6mer
294-314
0.003
0
LINC00479
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000412102
Biotype: lincRNA
Gene id: ENSG00000236384
Gene Name: LINC00479
UCSC graphic:
Expression:
  Cell Line Tissue Category
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
467-490
0.023
0
6mer
275-301
0.003
1
RP11-1109M24.5
hsa-miR-654-3p
0.720
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577956
Biotype: lincRNA
Gene id: ENSG00000264956
Gene Name: RP11-1109M24.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
399-409
0.018
0
6mer
2364-2391
0.009
0
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