LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-654-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-218E20.3
hsa-miR-654-3p
0.732
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000553648
Biotype: lincRNA
Gene id: ENSG00000258711
Gene Name: RP11-218E20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
- Brain Normal/Primary
- Breast Normal/Primary
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Lymph Node Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3639-3651
0.014
1
7mer
1394-1416
0.005
1
7mer
2852-2874
0.004
2
6mer
1090-1094
0.003
0
C5orf17
hsa-miR-654-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000512559
Biotype: lincRNA
Gene id: ENSG00000248874
Gene Name: C5orf17
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1734-1757
0.020
2
6mer
1868-1895
0.007
1
RP11-158D2.2
hsa-miR-654-3p
0.731
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000423515
Biotype: lincRNA
Gene id: ENSG00000227463
Gene Name: RP11-158D2.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
822-848
0.020
1
7mer
1315-1327
0.007
0
XLOC_001963
hsa-miR-654-3p
0.730
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004113
Biotype: transcript isomorph
Gene id: XLOC_001963
Gene Name: XLOC_001963
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1564-1583
0.020
1
6mer
10-34
0.007
0
LINC00654
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: NR_015406.1
Biotype: lincRNA
Gene id: NR_015406.1 (gene)
Gene Name: LINC00654
UCSC graphic: -
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2730-2736
0.027
1
RP11-234O6.2
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000508189
Biotype: antisense
Gene id: ENSG00000249568
Gene Name: RP11-234O6.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2162-2183
0.013
1
7mer
596-621
0.011
6
6mer
2435-2447
0.003
1
XLOC_013045
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026786
Biotype: transcript isomorph
Gene id: XLOC_013045
Gene Name: XLOC_013045
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
887-905
0.026
0
6mer
1372-1397
0.001
0
MAPKAPK5-AS1
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000443596
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
576-596
0.016
Not Conserved
7mer
385-400
0.011
1
LINC01014
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000436432
Biotype: sense_intronic
Gene id: ENSG00000223941
Gene Name: LINC01014
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
119-136
0.024
1
6mer
261-281
0.003
0
HOXB-AS3
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000481995
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
299-324
0.027
1
NR2F1-AS1
hsa-miR-654-3p
0.729
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000606233
Biotype: antisense
Gene id: ENSG00000237187
Gene Name: NR2F1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
247-270
0.012
1
7mer
1053-1066
0.008
0
6mer
194-211
0.007
3
EDRF1-AS1
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000612306
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
159-171
0.027
4
RP11-398K22.12
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000441363
Biotype: antisense
Gene id: ENSG00000229852
Gene Name: RP11-398K22.12
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1501-1510
0.027
1
XLOC_001659
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003851
Biotype: transcript isomorph
Gene id: XLOC_001659
Gene Name: XLOC_001659
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Lung Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
129-153
0.027
0
HIPK1-AS1
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000450706
Biotype: antisense
Gene id: ENSG00000235527
Gene Name: HIPK1-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
1377-1399
0.027
1
RP11-177F15.1
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442726
Biotype: lincRNA
Gene id: ENSG00000231877
Gene Name: RP11-177F15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
778-800
0.013
Not Conserved
7mer
2177-2202
0.009
1
6mer
2626-2649
0.005
0
HOXB-AS3
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000477144
Biotype: antisense
Gene id: ENSG00000233101
Gene Name: HOXB-AS3
UCSC graphic:
Expression:
  Cell Line Tissue Category
HREpiC Kidney Normal/Primary
IMR90 Lung Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
513-538
0.027
1
CTC-524C5.2
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000575890
Biotype: antisense
Gene id: ENSG00000263272
Gene Name: CTC-524C5.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1861-1867
0.019
3
6mer
25-43
0.004
1
6mer
1153-1179
0.003
0
XLOC_010776
hsa-miR-654-3p
0.728
mTTBlnEmP

Gene Details
Chromosome: chr14
Transcript: TCONS_00022935
Biotype: transcript isomorph
Gene id: XLOC_010776
Gene Name: XLOC_010776
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Brain Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1409-1420
0.016
7
7mer
2270-2292
0.011
1
RP1-167O22.1
hsa-miR-654-3p
0.727
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000624385
Biotype: lincRNA
Gene id: ENSG00000279082
Gene Name: RP1-167O22.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
24-43
0.027
1
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept