LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-231E19.1
hsa-miR-654-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000562796
Biotype: lincRNA
Gene id: ENSG00000260059
Gene Name: RP11-231E19.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2147-2166
0.011
1
7mer
1216-1233
0.011
1
6mer
2524-2549
0.006
1
AP001601.2
hsa-miR-654-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000426771
Biotype: antisense
Gene id: ENSG00000223563
Gene Name: AP001601.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
190-212
0.028
0
XLOC_011720
hsa-miR-654-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024397
Biotype: transcript isomorph
Gene id: XLOC_011720
Gene Name: XLOC_011720
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Ovary Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
53-69
0.019
1
8mer
350-375
0.009
1
CPEB2-AS1
hsa-miR-654-3p
0.739
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000500394
Biotype: lincRNA
Gene id: ENSG00000247624
Gene Name: CPEB2-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
190-209
0.028
1
RP11-196G11.5
hsa-miR-654-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000610813
Biotype: sense_intronic
Gene id: ENSG00000278133
Gene Name: RP11-196G11.5
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
132-149
0.016
0
7mer
465-486
0.012
0
XLOC_008503
hsa-miR-654-3p
0.738
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018225
Biotype: transcript isomorph
Gene id: XLOC_008503
Gene Name: XLOC_008503
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
- Brain Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
- Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
- Testes Normal/Primary
- Thyroid Normal/Primary
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
464-488
0.028
1
AP000431.2
hsa-miR-654-3p
0.737
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000424219
Biotype: lincRNA
Gene id: ENSG00000229289
Gene Name: AP000431.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
449-463
0.022
0
6mer
279-300
0.006
1
LINC00343
hsa-miR-654-3p
0.736
mTTBlnEmP

Gene Details
Chromosome: 13
Transcript: ENST00000596398
Biotype: lincRNA
Gene id: ENSG00000226620
Gene Name: LINC00343
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
188-210
0.018
1
7mer
188-200
0.010
1
XLOC_005476
hsa-miR-654-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011964
Biotype: transcript isomorph
Gene id: XLOC_005476
Gene Name: XLOC_005476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
157-183
0.020
Not Conserved
7mer
337-343
0.004
Not Conserved
6mer
853-873
0.003
2
KB-1552D7.2
hsa-miR-654-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000622091
Biotype: sense_intronic
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1618-1640
0.014
1
7mer
83-93
0.013
1
AC093375.1
hsa-miR-654-3p
0.735
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000428651
Biotype: lincRNA
Gene id: ENSG00000226383
Gene Name: AC093375.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
157-167
0.024
2
6mer
702-725
0.004
0
AC002480.2
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000414116
Biotype: lincRNA
Gene id: ENSG00000238033
Gene Name: AC002480.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2382-2404
0.018
5
7mer
804-824
0.010
1
LOC100507387
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: NR_038402.1
Biotype: sense
Gene id: NR_038402.1 (gene)
Gene Name: LOC100507387
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
915-931
0.012
Not Conserved
6mer
550-564
0.011
1
6mer
220-237
0.004
Not Conserved
KB-1552D7.2
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000319051
Biotype: pseudogene
Gene id: ENSG00000179577
Gene Name: KB-1552D7.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1617-1639
0.014
1
7mer
83-93
0.013
1
RP11-348J24.2
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000502934
Biotype: lincRNA
Gene id: ENSG00000250049
Gene Name: RP11-348J24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Heart Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-586
0.015
0
7mer
2615-2621
0.010
1
7mer
1450-1466
0.002
0
MAPKAPK5-AS1
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000609983
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-163
0.023
Not Conserved
6mer
401-419
0.005
1
XLOC_006685
hsa-miR-654-3p
0.734
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014575
Biotype: transcript isomorph
Gene id: XLOC_006685
Gene Name: XLOC_006685
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
758-782
0.027
1
XLOC_003027
hsa-miR-654-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: chr3
Transcript: TCONS_00006403
Biotype: transcript isomorph
Gene id: XLOC_003027
Gene Name: XLOC_003027
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
162-180
0.017
3
7mer
292-311
0.011
1
LINC01215
hsa-miR-654-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000607746
Biotype: lincRNA
Gene id: ENSG00000271856
Gene Name: LINC01215
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2283-2309
0.020
1
9mer
1048-1074
0.007
1
EDRF1-AS1
hsa-miR-654-3p
0.733
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000615795
Biotype: antisense
Gene id: ENSG00000236991
Gene Name: EDRF1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
198-210
0.027
4
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