LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-654-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-354P17.15
hsa-miR-654-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000569618
Biotype: lincRNA
Gene id: ENSG00000261696
Gene Name: RP11-354P17.15
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
387-406
0.017
Not Conserved
6mer
1216-1220
0.006
1
6mer
252-278
0.005
0
ITIH4-AS1
hsa-miR-654-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000478366
Biotype: antisense
Gene id: ENSG00000239799
Gene Name: ITIH4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
293-319
0.028
3
RP11-143A12.3
hsa-miR-654-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510067
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
168-189
0.028
0
RP11-171I2.1
hsa-miR-654-3p
0.746
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000590024
Biotype: antisense
Gene id: ENSG00000267784
Gene Name: RP11-171I2.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
502-512
0.025
5
6mer
232-252
0.004
2
LINC00680
hsa-miR-654-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000422882
Biotype: lincRNA
Gene id: ENSG00000215190
Gene Name: LINC00680
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2425-2436
0.028
0
XLOC_011701
hsa-miR-654-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024377
Biotype: transcript isomorph
Gene id: XLOC_011701
Gene Name: XLOC_011701
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
471-496
0.021
0
6mer
164-190
0.007
0
AC105393.2
hsa-miR-654-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000449119
Biotype: lincRNA
Gene id: ENSG00000226277
Gene Name: AC105393.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
395-406
0.028
1
LINC01347
hsa-miR-654-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000427210
Biotype: lincRNA
Gene id: ENSG00000214837
Gene Name: LINC01347
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
hMSC-BM Bone Marrow Stem/Progenitor
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
HMEpC Mammary Gland Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
78-90
0.018
0
6mer
357-365
0.010
0
LINC01235
hsa-miR-654-3p
0.745
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000604724
Biotype: lincRNA
Gene id: ENSG00000270547
Gene Name: LINC01235
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1674-1692
0.011
5
7mer
1501-1511
0.009
6
7mer
1098-1114
0.008
6
RP11-143A12.3
hsa-miR-654-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000510229
Biotype: lincRNA
Gene id: ENSG00000250198
Gene Name: RP11-143A12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-222
0.028
0
XLOC_007796
hsa-miR-654-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: chr9
Transcript: TCONS_00016430
Biotype: transcript isomorph
Gene id: XLOC_007796
Gene Name: XLOC_007796
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2489-2508
0.014
1
7mer
1626-1644
0.007
1
7mer
2180-2185
0.006
0
6mer
1397-1415
0.002
0
RP1-101G11.3
hsa-miR-654-3p
0.744
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624442
Biotype: lincRNA
Gene id: ENSG00000280356
Gene Name: RP1-101G11.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
5399-5417
0.009
4
7mer
743-759
0.009
1
8mer
508-532
0.008
1
6mer
4887-4894
0.002
0
RP11-744D14.2
hsa-miR-654-3p
0.743
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000565257
Biotype: lincRNA
Gene id: ENSG00000260715
Gene Name: RP11-744D14.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
309-320
0.018
5
7mer
912-924
0.010
0
RAPGEF4-AS1
hsa-miR-654-3p
0.742
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: NR_026995.1
Biotype: antisense
Gene id: NR_026995.1 (gene)
Gene Name: RAPGEF4-AS1
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
620-637
0.019
2
6mer
4321-4325
0.004
1
6mer
3716-3738
0.003
1
6mer
2424-2442
0.002
1
AGAP11
hsa-miR-654-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000444431
Biotype: processed_transcript
Gene id: ENSG00000151303
Gene Name: AGAP11
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4419-4432
0.019
0
7mer
2414-2438
0.005
0
7mer
3242-3258
0.002
Not Conserved
6mer
3006-3024
0.001
0
XLOC_004286
hsa-miR-654-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009235
Biotype: transcript isomorph
Gene id: XLOC_004286
Gene Name: XLOC_004286
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
201-222
0.028
0
AP006222.2
hsa-miR-654-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000442116
Biotype: lincRNA
Gene id: ENSG00000228463
Gene Name: AP006222.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
143-161
0.023
Not Conserved
6mer
50-68
0.005
Not Conserved
RAPGEF4-AS1
hsa-miR-654-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000435328
Biotype: antisense
Gene id: ENSG00000228016
Gene Name: RAPGEF4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
623-640
0.019
2
6mer
4324-4328
0.004
1
6mer
3719-3741
0.002
1
6mer
2427-2445
0.002
1
RP11-103B5.4
hsa-miR-654-3p
0.741
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000614934
Biotype: sense_intronic
Gene id: ENSG00000277840
Gene Name: RP11-103B5.4
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
249-254
0.028
9
XLOC_011823
hsa-miR-654-3p
0.740
mTTBlnEmP

Gene Details
Chromosome: chr16
Transcript: TCONS_00024504
Biotype: transcript isomorph
Gene id: XLOC_011823
Gene Name: XLOC_011823
UCSC graphic: -
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
- Liver Normal/Primary
A549 Lung Cancer/Malignant
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-112
0.019
0
6mer
525-530
0.006
0
6mer
402-422
0.003
0
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept