LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
RP11-78B10.2
hsa-miR-654-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000439443
Biotype: antisense
Gene id: ENSG00000236911
Gene Name: RP11-78B10.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
248-266
0.013
1
7mer
209-214
0.011
1
6mer
173-186
0.005
0
RP11-141O11.2
hsa-miR-654-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504280
Biotype: lincRNA
Gene id: ENSG00000249352
Gene Name: RP11-141O11.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
287-306
0.018
0
6mer
490-510
0.006
1
6mer
86-101
0.005
0
RP11-666A8.7
hsa-miR-654-3p
0.753
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000590241
Biotype: sense_intronic
Gene id: ENSG00000267543
Gene Name: RP11-666A8.7
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
512-527
0.029
1
CTA-544A11.1
hsa-miR-654-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000624411
Biotype: antisense
Gene id: ENSG00000279802
Gene Name: CTA-544A11.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1737-1754
0.008
5
7mer
327-349
0.006
1
7mer
2182-2207
0.005
3
6mer
827-851
0.002
2
6mer
7597-7601
0.002
1
6mer
5174-5198
0.002
1
6mer
7061-7081
0.002
1
6mer
3532-3559
0.002
1
XLOC_002476
hsa-miR-654-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00003490
Biotype: transcript isomorph
Gene id: XLOC_002476
Gene Name: XLOC_002476
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
877-900
0.029
3
RP11-186N15.3
hsa-miR-654-3p
0.752
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000421657
Biotype: antisense
Gene id: ENSG00000228302
Gene Name: RP11-186N15.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
180-198
0.029
0
XLOC_002054
hsa-miR-654-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr2
Transcript: TCONS_00004212
Biotype: transcript isomorph
Gene id: XLOC_002054
Gene Name: XLOC_002054
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
184-199
0.017
1
6mer
1319-1335
0.006
2
6mer
443-463
0.003
0
6mer
623-639
0.002
2
RP1-34H18.1
hsa-miR-654-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000550042
Biotype: lincRNA
Gene id: ENSG00000231121
Gene Name: RP1-34H18.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
923-940
0.029
9
XLOC_014114
hsa-miR-654-3p
0.751
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029175
Biotype: transcript isomorph
Gene id: XLOC_014114
Gene Name: XLOC_014114
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1621-1626
0.013
0
6mer
1671-1695
0.006
0
6mer
803-810
0.005
0
6mer
1335-1357
0.004
0
RP11-730N24.1
hsa-miR-654-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000504339
Biotype: lincRNA
Gene id: ENSG00000248908
Gene Name: RP11-730N24.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1289-1310
0.015
2
7mer
2005-2030
0.010
1
6mer
1990-1995
0.003
0
LINC01317
hsa-miR-654-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: 2
Transcript: ENST00000366209
Biotype: lincRNA
Gene id: ENSG00000203386
Gene Name: LINC01317
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
351-378
0.024
5
7mer
441-453
0.004
0
XLOC_007913
hsa-miR-654-3p
0.750
mTTBlnEmP

Gene Details
Chromosome: chrX
Transcript: TCONS_00017120
Biotype: transcript isomorph
Gene id: XLOC_007913
Gene Name: XLOC_007913
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
35-41
0.029
Not Conserved
RP11-686D22.4
hsa-miR-654-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000592117
Biotype: lincRNA
Gene id: ENSG00000267547
Gene Name: RP11-686D22.4
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
GM12878 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
238-264
0.020
0
6mer
47-70
0.009
0
CTB-158E9.1
hsa-miR-654-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000522134
Biotype: lincRNA
Gene id: ENSG00000254293
Gene Name: CTB-158E9.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
368-380
0.029
6
ERICH3-AS1
hsa-miR-654-3p
0.749
mTTBlnEmP

Gene Details
Chromosome: 1
Transcript: ENST00000612390
Biotype: antisense
Gene id: ENSG00000234497
Gene Name: ERICH3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
4748-4763
0.014
0
7mer
1090-1109
0.011
2
7mer
2851-2872
0.004
2
RP11-85I21.1
hsa-miR-654-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000484222
Biotype: lincRNA
Gene id: ENSG00000241884
Gene Name: RP11-85I21.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1558-1572
0.014
1
8mer
718-741
0.010
3
6mer
1880-1889
0.004
Not Conserved
AC090627.1
hsa-miR-654-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000604191
Biotype: antisense
Gene id: ENSG00000235300
Gene Name: AC090627.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
92-100
0.029
7
RP11-649E7.5
hsa-miR-654-3p
0.748
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000555043
Biotype: antisense
Gene id: ENSG00000258377
Gene Name: RP11-649E7.5
UCSC graphic:
Expression:
  Cell Line Tissue Category
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1756-1780
0.025
0
6mer
1066-1071
0.003
6
XLOC_013869
hsa-miR-654-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: chr21
Transcript: TCONS_00029197
Biotype: transcript isomorph
Gene id: XLOC_013869
Gene Name: XLOC_013869
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
HeLa Cervix Cancer/Malignant
- Colon Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
333-356
0.028
0
RP11-479G22.8
hsa-miR-654-3p
0.747
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000609742
Biotype: lincRNA
Gene id: ENSG00000273038
Gene Name: RP11-479G22.8
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1572-1580
0.018
1
6mer
19-30
0.007
1
6mer
644-663
0.003
0
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