LncBase Predicted v.2
Help
Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
Bulk download:
We have updated the bulk download module, which simplifies the download process! Please find the new online form by following this link
Deprecated!
This version is deprecated. Users are strongly advised to only use the latest, up-to-date versions of DIANA-Tools and Databases.
Please follow this link to navigate to the latest database version.

hsa-miR-654-3p


or   Search by location
Loading... Please wait, this might take a few seconds...



Go to Experimental module
Filters

Gene
miRNA
Score
DIANA Links
RP11-1080G15.1
hsa-miR-654-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518417
Biotype: lincRNA
Gene id: ENSG00000253557
Gene Name: RP11-1080G15.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
500-512
0.030
1
RP11-10H3.1
hsa-miR-654-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000518222
Biotype: lincRNA
Gene id: ENSG00000253474
Gene Name: RP11-10H3.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
562-586
0.030
1
RP11-38M8.1
hsa-miR-654-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000609209
Biotype: lincRNA
Gene id: ENSG00000273297
Gene Name: RP11-38M8.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
46-62
0.021
1
7mer
209-232
0.009
1
RP11-131L12.3
hsa-miR-654-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000619032
Biotype: lincRNA
Gene id: ENSG00000275759
Gene Name: RP11-131L12.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
62-69
0.030
3
LINC00943
hsa-miR-654-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000535118
Biotype: lincRNA
Gene id: ENSG00000189238
Gene Name: LINC00943
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
372-380
0.017
2
7mer
174-185
0.013
0
RP11-932O9.8
hsa-miR-654-3p
0.759
mTTBlnEmP

Gene Details
Chromosome: 15
Transcript: ENST00000602595
Biotype: antisense
Gene id: ENSG00000270016
Gene Name: RP11-932O9.8
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
221-240
0.029
Not Conserved
RP5-1116H23.6
hsa-miR-654-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000618494
Biotype: lincRNA
Gene id: ENSG00000277087
Gene Name: RP5-1116H23.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
44-67
0.029
1
XX-C2158C6.3
hsa-miR-654-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: ENST00000415530
Biotype: lincRNA
Gene id: ENSG00000225532
Gene Name: XX-C2158C6.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
237-252
0.023
1
6mer
274-285
0.007
0
NOVA1-AS1
hsa-miR-654-3p
0.758
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000547786
Biotype: antisense
Gene id: ENSG00000257842
Gene Name: NOVA1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
292-303
0.029
7
RP11-109J4.1
hsa-miR-654-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518301
Biotype: lincRNA
Gene id: ENSG00000253417
Gene Name: RP11-109J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-218
0.024
2
7mer
1024-1037
0.005
1
LINC00669
hsa-miR-654-3p
0.757
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000591469
Biotype: lincRNA
Gene id: ENSG00000267374
Gene Name: LINC00669
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
645-653
0.029
8
RP11-26N15.2
hsa-miR-654-3p
0.756
mTTBlnEmP

Gene Details
Chromosome: 18
Transcript: ENST00000584547
Biotype: lincRNA
Gene id: ENSG00000264790
Gene Name: RP11-26N15.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
284-292
0.029
4
SLC26A4-AS1
hsa-miR-654-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000440512
Biotype: antisense
Gene id: ENSG00000233705
Gene Name: SLC26A4-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
9mer
215-227
0.022
1
6mer
375-396
0.004
0
6mer
2973-2992
0.003
2
XLOC_010445
hsa-miR-654-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: chr13
Transcript: TCONS_00021851
Biotype: transcript isomorph
Gene id: XLOC_010445
Gene Name: XLOC_010445
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Adrenal Normal/Primary
- Brain Normal/Primary
- Breast Normal/Primary
- Colon Normal/Primary
Fibroblasts Foreskin Normal/Primary
- Heart Normal/Primary
- Kidney Normal/Primary
- Liver Normal/Primary
- Lung Normal/Primary
Fibroblasts Lung Normal/Primary
- Lymph Node Normal/Primary
- Ovary Normal/Primary
- Placenta Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary
- White Blood Cell Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
4296-4302
0.015
1
7mer
216-229
0.009
1
6mer
1191-1218
0.003
3
6mer
4631-4655
0.002
3
CTC-264K15.6
hsa-miR-654-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577329
Biotype: lincRNA
Gene id: ENSG00000263489
Gene Name: CTC-264K15.6
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
386-393
0.029
5
DLX6-AS1
hsa-miR-654-3p
0.755
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000431497
Biotype: antisense
Gene id: ENSG00000231764
Gene Name: DLX6-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant
HepG2 Liver Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
24-28
0.013
8
6mer
4350-4370
0.011
10
7mer
2569-2585
0.003
2
6mer
2294-2321
0.001
1
6mer
1301-1315
0.001
1
CTA-243E7.1
hsa-miR-654-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623980
Biotype: antisense
Gene id: ENSG00000279110
Gene Name: CTA-243E7.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
9513-9534
0.021
1
7mer
12565-12589
0.005
0
6mer
11277-11294
0.002
1
6mer
2367-2387
0.002
1
RP5-828H9.1
hsa-miR-654-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 20
Transcript: ENST00000430097
Biotype: lincRNA
Gene id: ENSG00000230563
Gene Name: RP5-828H9.1
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
844-850
0.029
1
RP11-861A13.4
hsa-miR-654-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: NR_110030.1
Biotype: lincRNA
Gene id: NR_110030.1 (gene)
Gene Name: RP11-861A13.4
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
2067-2093
0.020
1
9mer
832-858
0.009
1
CTD-3025N20.3
hsa-miR-654-3p
0.754
mTTBlnEmP

Gene Details
Chromosome: 8
Transcript: ENST00000606963
Biotype: lincRNA
Gene id: ENSG00000272010
Gene Name: CTD-3025N20.3
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
223-234
0.029
7
Funded by:
We have placed cookies on your device to help make this website and the services we offer better. By using this site, you agree to the use of cookies. Learn more
I accept