LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-654-3p


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Gene
miRNA
Score
DIANA Links
LINC00710
hsa-miR-654-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000596092
Biotype: retained_intron
Gene id: ENSG00000229240
Gene Name: LINC00710
UCSC graphic:
Expression:
  Cell Line Tissue Category
- Adipose Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
239-252
0.030
0
RP11-380D23.1
hsa-miR-654-3p
0.767
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000503998
Biotype: antisense
Gene id: ENSG00000250511
Gene Name: RP11-380D23.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1139-1145
0.024
0
6mer
737-748
0.004
6
6mer
694-714
0.002
1
XLOC_006766
hsa-miR-654-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr8
Transcript: TCONS_00014668
Biotype: transcript isomorph
Gene id: XLOC_006766
Gene Name: XLOC_006766
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
78-103
0.024
1
6mer
261-282
0.006
0
RP6-109B7.3
hsa-miR-654-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: NR_027034.1
Biotype: antisense
Gene id: NR_027034.1 (gene)
Gene Name: RP6-109B7.3
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
HeLa Cervix Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
538-553
0.016
6
7mer
272-281
0.010
2
6mer
1246-1270
0.003
0
6mer
408-430
0.002
1
RP11-231I16.1
hsa-miR-654-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000548738
Biotype: antisense
Gene id: ENSG00000257279
Gene Name: RP11-231I16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
1910-1934
0.013
10
7mer
884-895
0.010
1
6mer
268-292
0.004
1
6mer
2827-2850
0.002
1
6mer
2160-2176
0.001
0
XLOC_005066
hsa-miR-654-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr5
Transcript: TCONS_00009231
Biotype: transcript isomorph
Gene id: XLOC_005066
Gene Name: XLOC_005066
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Kidney Normal/Primary
- Prostate Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
200-218
0.024
2
7mer
1024-1037
0.006
1
XLOC_013021
hsa-miR-654-3p
0.766
mTTBlnEmP

Gene Details
Chromosome: chr19
Transcript: TCONS_00026968
Biotype: transcript isomorph
Gene id: XLOC_013021
Gene Name: XLOC_013021
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
6mer
36-59
0.015
0
6mer
75-90
0.012
0
6mer
108-125
0.003
Not Conserved
MCM3AP-AS1
hsa-miR-654-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: NR_002776.3
Biotype: antisense
Gene id: NR_002776.3 (gene)
Gene Name: MCM3AP-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD1 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2001-2016
0.022
0
7mer
1419-1430
0.008
0
RP11-109J4.1
hsa-miR-654-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 5
Transcript: ENST00000518580
Biotype: lincRNA
Gene id: ENSG00000253417
Gene Name: RP11-109J4.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
203-221
0.024
2
7mer
1027-1040
0.006
1
AP000462.1
hsa-miR-654-3p
0.765
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000540545
Biotype: antisense
Gene id: ENSG00000256315
Gene Name: AP000462.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
99-107
0.030
7
FRMPD3-AS1
hsa-miR-654-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: X
Transcript: ENST00000415252
Biotype: antisense
Gene id: ENSG00000227610
Gene Name: FRMPD3-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
11-36
0.030
6
LINC00645
hsa-miR-654-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 14
Transcript: ENST00000557359
Biotype: lincRNA
Gene id: ENSG00000258548
Gene Name: LINC00645
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3237-3252
0.017
0
7mer
2534-2545
0.008
1
6mer
2600-2609
0.003
2
6mer
1177-1195
0.002
1
UBE2E1-AS1
hsa-miR-654-3p
0.764
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000426702
Biotype: antisense
Gene id: ENSG00000223791
Gene Name: UBE2E1-AS1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
362-368
0.030
2
AC004158.3
hsa-miR-654-3p
0.763
mTTBlnEmP

Gene Details
Chromosome: 16
Transcript: ENST00000564508
Biotype: lincRNA
Gene id: ENSG00000260664
Gene Name: AC004158.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
588-595
0.022
8
7mer
1257-1276
0.008
8
MCM3AP-AS1
hsa-miR-654-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 21
Transcript: ENST00000455567
Biotype: antisense
Gene id: ENSG00000215424
Gene Name: MCM3AP-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
MCF7 Mammary Gland Cancer/Malignant
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
2001-2016
0.021
0
7mer
1419-1430
0.008
0
XLOC_005921
hsa-miR-654-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00012361
Biotype: transcript isomorph
Gene id: XLOC_005921
Gene Name: XLOC_005921
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
HepG2 Liver Cancer/Malignant
Fibroblasts Lung Normal/Primary
- Lung Normal/Primary
- Ovary Normal/Primary
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
452-478
0.013
1
7mer
321-347
0.008
Not Conserved
8mer
4137-4143
0.007
Not Conserved
6mer
3589-3610
0.002
Not Conserved
RP11-113O24.3
hsa-miR-654-3p
0.762
mTTBlnEmP

Gene Details
Chromosome: 9
Transcript: ENST00000422554
Biotype: lincRNA
Gene id: ENSG00000223716
Gene Name: RP11-113O24.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
106-121
0.030
2
MAPKAPK5-AS1
hsa-miR-654-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: NR_015404.1
Biotype: antisense
Gene id: NR_015404.1 (gene)
Gene Name: MAPKAPK5-AS1
UCSC graphic: -
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HEK293 Kidney Embryonic/Fetal/Stem/Progenitor
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBACD2 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
574-594
0.012
Not Conserved
7mer
383-398
0.010
1
6mer
2117-2134
0.005
1
6mer
832-850
0.002
1
MAPKAPK5-AS1
hsa-miR-654-3p
0.761
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000428207
Biotype: lincRNA
Gene id: ENSG00000234608
Gene Name: MAPKAPK5-AS1
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
K562 Blood Cancer/Malignant
HUVEC Blood Vessel Normal/Primary
SK-N-SH Brain Cancer/Malignant
HeLa Cervix Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
HREpiC Kidney Normal/Primary
HepG2 Liver Cancer/Malignant
A549 Lung Cancer/Malignant
IMR90 Lung Embryonic/Fetal/Stem/Progenitor
MCF7 Mammary Gland Cancer/Malignant
LCLBAC - Normal/Primary
LCLBACD3 - Normal/Primary
LCLBACD1 - Normal/Primary
LCLBACD2 - Normal/Primary


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
579-599
0.012
Not Conserved
7mer
388-403
0.010
1
6mer
2122-2139
0.005
1
6mer
837-855
0.002
1
RP11-324I22.2
hsa-miR-654-3p
0.760
mTTBlnEmP

Gene Details
Chromosome: 10
Transcript: ENST00000439198
Biotype: lincRNA
Gene id: ENSG00000233200
Gene Name: RP11-324I22.2
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-654-3p
Sequence: uaugucugcugaccaucaccuu
MirBase ID: MIMAT0004814
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
163-182
0.030
3
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